Gene : Eucgr.K01239 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1031
Name:  ? Eucgr.K01239 Secondary Identifier:  ? PAC:32069174
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01239 0.5kb upstream 0.5kb upstream 7180 true Chr11: 15833278-15840457 Eucalyptus grandis
Eucgr.K01239 0.5kb upstream 0.5kb upstream 500 false Chr11: 15833278-15833777 Eucalyptus grandis
Eucgr.K01239 0.5kb downstream 0.5kb downstream 7180 true Chr11: 15833778-15840957 Eucalyptus grandis
Eucgr.K01239 0.5kb downstream 0.5kb downstream 500 false Chr11: 15840458-15840957 Eucalyptus grandis
Eucgr.K01239 1.0kb upstream 1.0kb upstream 7680 true Chr11: 15832778-15840457 Eucalyptus grandis
Eucgr.K01239 1.0kb upstream 1.0kb upstream 1000 false Chr11: 15832778-15833777 Eucalyptus grandis
Eucgr.K01239 1.0kb downstream 1.0kb downstream 7680 true Chr11: 15833778-15841457 Eucalyptus grandis
Eucgr.K01239 1.0kb downstream 1.0kb downstream 1000 false Chr11: 15840458-15841457 Eucalyptus grandis
Eucgr.K01239 2.0kb upstream 2.0kb upstream 8680 true Chr11: 15831778-15840457 Eucalyptus grandis
Eucgr.K01239 2.0kb upstream 2.0kb upstream 2000 false Chr11: 15831778-15833777 Eucalyptus grandis
Eucgr.K01239 2.0kb downstream 2.0kb downstream 8680 true Chr11: 15833778-15842457 Eucalyptus grandis
Eucgr.K01239 2.0kb downstream 2.0kb downstream 2000 false Chr11: 15840458-15842457 Eucalyptus grandis
Eucgr.K01239 5.0kb upstream 5.0kb upstream 11680 true Chr11: 15828778-15840457 Eucalyptus grandis
Eucgr.K01239 5.0kb upstream 5.0kb upstream 5000 false Chr11: 15828778-15833777 Eucalyptus grandis
Eucgr.K01239 5.0kb downstream 5.0kb downstream 11680 true Chr11: 15833778-15845457 Eucalyptus grandis
Eucgr.K01239 5.0kb downstream 5.0kb downstream 5000 false Chr11: 15840458-15845457 Eucalyptus grandis
Eucgr.K01239 10.0kb upstream 10.0kb upstream 16680 true Chr11: 15823778-15840457 Eucalyptus grandis
Eucgr.K01239 10.0kb upstream 10.0kb upstream 10000 false Chr11: 15823778-15833777 Eucalyptus grandis
Eucgr.K01239 10.0kb downstream 10.0kb downstream 16680 true Chr11: 15833778-15850457 Eucalyptus grandis
Eucgr.K01239 10.0kb downstream 10.0kb downstream 10000 false Chr11: 15840458-15850457 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061532 5270 Rosid View MSA
123741129 5271 Pentapetalae View MSA
122786104 5272 Eudicot View MSA
122045308 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346704 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.85498 0.0 20.064    
cufflinks 2.85902 0.0 7.11165    
cufflinks 5.83914 0.0 13.5774    
cufflinks 2.37943 0.0 6.00398    
cufflinks 1.46053 0.0 3.89308   Low
cufflinks 28.3875 0.0 62.9034   High

0 Strain