Gene : Eucgr.K02027 E. grandis v2.0
Defline:  (1 of 4) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Genomic Order:  1685
Name:  ? Eucgr.K02027 Secondary Identifier:  ? PAC:32065937
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K02027 0.5kb upstream 0.5kb upstream 5993 true Chr11: 27115344-27121336 Eucalyptus grandis
Eucgr.K02027 0.5kb upstream 0.5kb upstream 500 false Chr11: 27120837-27121336 Eucalyptus grandis
Eucgr.K02027 0.5kb downstream 0.5kb downstream 5993 true Chr11: 27114844-27120836 Eucalyptus grandis
Eucgr.K02027 0.5kb downstream 0.5kb downstream 500 false Chr11: 27114844-27115343 Eucalyptus grandis
Eucgr.K02027 1.0kb upstream 1.0kb upstream 6493 true Chr11: 27115344-27121836 Eucalyptus grandis
Eucgr.K02027 1.0kb upstream 1.0kb upstream 1000 false Chr11: 27120837-27121836 Eucalyptus grandis
Eucgr.K02027 1.0kb downstream 1.0kb downstream 6493 true Chr11: 27114344-27120836 Eucalyptus grandis
Eucgr.K02027 1.0kb downstream 1.0kb downstream 1000 false Chr11: 27114344-27115343 Eucalyptus grandis
Eucgr.K02027 2.0kb upstream 2.0kb upstream 7493 true Chr11: 27115344-27122836 Eucalyptus grandis
Eucgr.K02027 2.0kb upstream 2.0kb upstream 2000 false Chr11: 27120837-27122836 Eucalyptus grandis
Eucgr.K02027 2.0kb downstream 2.0kb downstream 7493 true Chr11: 27113344-27120836 Eucalyptus grandis
Eucgr.K02027 2.0kb downstream 2.0kb downstream 2000 false Chr11: 27113344-27115343 Eucalyptus grandis
Eucgr.K02027 5.0kb upstream 5.0kb upstream 10493 true Chr11: 27115344-27125836 Eucalyptus grandis
Eucgr.K02027 5.0kb upstream 5.0kb upstream 5000 false Chr11: 27120837-27125836 Eucalyptus grandis
Eucgr.K02027 5.0kb downstream 5.0kb downstream 10493 true Chr11: 27110344-27120836 Eucalyptus grandis
Eucgr.K02027 5.0kb downstream 5.0kb downstream 5000 false Chr11: 27110344-27115343 Eucalyptus grandis
Eucgr.K02027 10.0kb upstream 10.0kb upstream 15493 true Chr11: 27115344-27130836 Eucalyptus grandis
Eucgr.K02027 10.0kb upstream 10.0kb upstream 10000 false Chr11: 27120837-27130836 Eucalyptus grandis
Eucgr.K02027 10.0kb downstream 10.0kb downstream 15493 true Chr11: 27105344-27120836 Eucalyptus grandis
Eucgr.K02027 10.0kb downstream 10.0kb downstream 10000 false Chr11: 27105344-27115343 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066804 5270 Rosid View MSA
123746132 5271 Pentapetalae View MSA
122792438 5272 Eudicot View MSA
122047949 5273 Angiosperm View MSA
121349506 5274 Embryophyte View MSA
123428007 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.4539 0.0 114.714 High  
cufflinks 27.7139 0.0 62.6922    
cufflinks 47.3378 0.0 111.819 High  
cufflinks 22.6229 0.0 50.7658   Low
cufflinks 36.6075 0.0 84.2904    
cufflinks 43.1763 0.0 100.864 High  

0 Strain