Gene : Eucgr.K03156 E. grandis v2.0
Defline:  (1 of 9) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2618
Name:  ? Eucgr.K03156 Secondary Identifier:  ? PAC:32067996
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K03156 0.5kb upstream 0.5kb upstream 2835 true Chr11: 39534456-39537290 Eucalyptus grandis
Eucgr.K03156 0.5kb upstream 0.5kb upstream 500 false Chr11: 39536791-39537290 Eucalyptus grandis
Eucgr.K03156 0.5kb downstream 0.5kb downstream 2835 true Chr11: 39533956-39536790 Eucalyptus grandis
Eucgr.K03156 0.5kb downstream 0.5kb downstream 500 false Chr11: 39533956-39534455 Eucalyptus grandis
Eucgr.K03156 1.0kb upstream 1.0kb upstream 3335 true Chr11: 39534456-39537790 Eucalyptus grandis
Eucgr.K03156 1.0kb upstream 1.0kb upstream 1000 false Chr11: 39536791-39537790 Eucalyptus grandis
Eucgr.K03156 1.0kb downstream 1.0kb downstream 3335 true Chr11: 39533456-39536790 Eucalyptus grandis
Eucgr.K03156 1.0kb downstream 1.0kb downstream 1000 false Chr11: 39533456-39534455 Eucalyptus grandis
Eucgr.K03156 2.0kb upstream 2.0kb upstream 4335 true Chr11: 39534456-39538790 Eucalyptus grandis
Eucgr.K03156 2.0kb upstream 2.0kb upstream 2000 false Chr11: 39536791-39538790 Eucalyptus grandis
Eucgr.K03156 2.0kb downstream 2.0kb downstream 4335 true Chr11: 39532456-39536790 Eucalyptus grandis
Eucgr.K03156 2.0kb downstream 2.0kb downstream 2000 false Chr11: 39532456-39534455 Eucalyptus grandis
Eucgr.K03156 5.0kb upstream 5.0kb upstream 7335 true Chr11: 39534456-39541790 Eucalyptus grandis
Eucgr.K03156 5.0kb upstream 5.0kb upstream 5000 false Chr11: 39536791-39541790 Eucalyptus grandis
Eucgr.K03156 5.0kb downstream 5.0kb downstream 7335 true Chr11: 39529456-39536790 Eucalyptus grandis
Eucgr.K03156 5.0kb downstream 5.0kb downstream 5000 false Chr11: 39529456-39534455 Eucalyptus grandis
Eucgr.K03156 10.0kb upstream 10.0kb upstream 12335 true Chr11: 39534456-39546790 Eucalyptus grandis
Eucgr.K03156 10.0kb upstream 10.0kb upstream 10000 false Chr11: 39536791-39546790 Eucalyptus grandis
Eucgr.K03156 10.0kb downstream 10.0kb downstream 12335 true Chr11: 39524456-39536790 Eucalyptus grandis
Eucgr.K03156 10.0kb downstream 10.0kb downstream 10000 false Chr11: 39524456-39534455 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068324 5270 Rosid View MSA
123737648 5271 Pentapetalae View MSA
122793672 5272 Eudicot View MSA
122045784 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.48198 0.0 3.94511    
cufflinks 0.253845 0.0 0.817245 Low Low
cufflinks 0.902269 0.0 2.51284    
cufflinks 1.21128 0.0 3.26207    
cufflinks 0.179578 0.0 0.607937 Low Low
cufflinks 1.66068 0.0 4.38472    

0 Strain