Gene : Eucgr.L02949 E. grandis v2.0
Defline:  (1 of 2) PTHR33372:SF1 - CHLOROPLAST J-LIKE DOMAIN 1-CONTAINING PROTEIN Genomic Order:  1
Name:  ? Eucgr.L02949 Secondary Identifier:  ? PAC:32027856
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L02949 0.5kb upstream 0.5kb upstream 5982 true scaffold_1668: 1491-7472 Eucalyptus grandis
Eucgr.L02949 0.5kb upstream 0.5kb upstream 500 false scaffold_1668: 1491-1990 Eucalyptus grandis
Eucgr.L02949 0.5kb downstream 0.5kb downstream 5982 true scaffold_1668: 1991-7972 Eucalyptus grandis
Eucgr.L02949 0.5kb downstream 0.5kb downstream 500 false scaffold_1668: 7473-7972 Eucalyptus grandis
Eucgr.L02949 1.0kb upstream 1.0kb upstream 6482 true scaffold_1668: 991-7472 Eucalyptus grandis
Eucgr.L02949 1.0kb upstream 1.0kb upstream 1000 false scaffold_1668: 991-1990 Eucalyptus grandis
Eucgr.L02949 1.0kb downstream 1.0kb downstream 6482 true scaffold_1668: 1991-8472 Eucalyptus grandis
Eucgr.L02949 1.0kb downstream 1.0kb downstream 1000 false scaffold_1668: 7473-8472 Eucalyptus grandis
Eucgr.L02949 2.0kb upstream 2.0kb upstream 7472 true scaffold_1668: 1-7472 Eucalyptus grandis
Eucgr.L02949 2.0kb upstream 2.0kb upstream 1990 false scaffold_1668: 1-1990 Eucalyptus grandis
Eucgr.L02949 2.0kb downstream 2.0kb downstream 7119 true scaffold_1668: 1991-9109 Eucalyptus grandis
Eucgr.L02949 2.0kb downstream 2.0kb downstream 1637 false scaffold_1668: 7473-9109 Eucalyptus grandis
Eucgr.L02949 5.0kb upstream 5.0kb upstream 7472 true scaffold_1668: 1-7472 Eucalyptus grandis
Eucgr.L02949 5.0kb upstream 5.0kb upstream 1990 false scaffold_1668: 1-1990 Eucalyptus grandis
Eucgr.L02949 5.0kb downstream 5.0kb downstream 7119 true scaffold_1668: 1991-9109 Eucalyptus grandis
Eucgr.L02949 5.0kb downstream 5.0kb downstream 1637 false scaffold_1668: 7473-9109 Eucalyptus grandis
Eucgr.L02949 10.0kb upstream 10.0kb upstream 7472 true scaffold_1668: 1-7472 Eucalyptus grandis
Eucgr.L02949 10.0kb upstream 10.0kb upstream 1990 false scaffold_1668: 1-1990 Eucalyptus grandis
Eucgr.L02949 10.0kb downstream 10.0kb downstream 7119 true scaffold_1668: 1991-9109 Eucalyptus grandis
Eucgr.L02949 10.0kb downstream 10.0kb downstream 1637 false scaffold_1668: 7473-9109 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063539 5270 Rosid View MSA
123738014 5271 Pentapetalae View MSA
122791822 5272 Eudicot View MSA
122045556 5273 Angiosperm View MSA
121344488 5274 Embryophyte View MSA
123428806 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.01927 0.0 17.1645    
cufflinks 6.6236 0.0 16.1668    
cufflinks 7.87949 0.0 18.9873    
cufflinks 4.44092 0.0 11.2756   Low
cufflinks 4.55382 0.0 11.5883   Low
cufflinks 12.9026 0.0 29.9574   High

0 Strain