Gene : Eucgr.L02850 E. grandis v2.0
Defline:  (1 of 4) PTHR12709:SF3 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATED Genomic Order:  1
Name:  ? Eucgr.L02850 Secondary Identifier:  ? PAC:32062435
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L02850 0.5kb upstream 0.5kb upstream 2063 true scaffold_1482: 5379-7441 Eucalyptus grandis
Eucgr.L02850 0.5kb upstream 0.5kb upstream 500 false scaffold_1482: 5379-5878 Eucalyptus grandis
Eucgr.L02850 0.5kb downstream 0.5kb downstream 2063 true scaffold_1482: 5879-7941 Eucalyptus grandis
Eucgr.L02850 0.5kb downstream 0.5kb downstream 500 false scaffold_1482: 7442-7941 Eucalyptus grandis
Eucgr.L02850 1.0kb upstream 1.0kb upstream 2563 true scaffold_1482: 4879-7441 Eucalyptus grandis
Eucgr.L02850 1.0kb upstream 1.0kb upstream 1000 false scaffold_1482: 4879-5878 Eucalyptus grandis
Eucgr.L02850 1.0kb downstream 1.0kb downstream 2563 true scaffold_1482: 5879-8441 Eucalyptus grandis
Eucgr.L02850 1.0kb downstream 1.0kb downstream 1000 false scaffold_1482: 7442-8441 Eucalyptus grandis
Eucgr.L02850 2.0kb upstream 2.0kb upstream 3563 true scaffold_1482: 3879-7441 Eucalyptus grandis
Eucgr.L02850 2.0kb upstream 2.0kb upstream 2000 false scaffold_1482: 3879-5878 Eucalyptus grandis
Eucgr.L02850 2.0kb downstream 2.0kb downstream 3563 true scaffold_1482: 5879-9441 Eucalyptus grandis
Eucgr.L02850 2.0kb downstream 2.0kb downstream 2000 false scaffold_1482: 7442-9441 Eucalyptus grandis
Eucgr.L02850 5.0kb upstream 5.0kb upstream 6563 true scaffold_1482: 879-7441 Eucalyptus grandis
Eucgr.L02850 5.0kb upstream 5.0kb upstream 5000 false scaffold_1482: 879-5878 Eucalyptus grandis
Eucgr.L02850 5.0kb downstream 5.0kb downstream 4325 true scaffold_1482: 5879-10203 Eucalyptus grandis
Eucgr.L02850 5.0kb downstream 5.0kb downstream 2762 false scaffold_1482: 7442-10203 Eucalyptus grandis
Eucgr.L02850 10.0kb upstream 10.0kb upstream 7441 true scaffold_1482: 1-7441 Eucalyptus grandis
Eucgr.L02850 10.0kb upstream 10.0kb upstream 5878 false scaffold_1482: 1-5878 Eucalyptus grandis
Eucgr.L02850 10.0kb downstream 10.0kb downstream 4325 true scaffold_1482: 5879-10203 Eucalyptus grandis
Eucgr.L02850 10.0kb downstream 10.0kb downstream 2762 false scaffold_1482: 7442-10203 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061430 5270 Rosid View MSA
123744822 5271 Pentapetalae View MSA
122793544 5272 Eudicot View MSA
122044713 5273 Angiosperm View MSA
121351673 5274 Embryophyte View MSA
123382271 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.405815 0.0 1.44705 Low Low
cufflinks 1.34211 0.0 4.11874    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.99484 0.0 3.16604    
cufflinks 5.01072 0.0 13.3255   High
cufflinks 0.625053 0.0 2.13055 Low  

0 Strain