Gene : Eucgr.L01550 E. grandis v2.0
Defline:  (1 of 2) PTHR20855:SF47 - EXPRESSED PROTEIN Genomic Order:  5
Name:  ? Eucgr.L01550 Secondary Identifier:  ? PAC:32027602
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L01550 0.5kb upstream 0.5kb upstream 5276 true scaffold_246: 25015-30290 Eucalyptus grandis
Eucgr.L01550 0.5kb upstream 0.5kb upstream 500 false scaffold_246: 29791-30290 Eucalyptus grandis
Eucgr.L01550 0.5kb downstream 0.5kb downstream 5276 true scaffold_246: 24515-29790 Eucalyptus grandis
Eucgr.L01550 0.5kb downstream 0.5kb downstream 500 false scaffold_246: 24515-25014 Eucalyptus grandis
Eucgr.L01550 1.0kb upstream 1.0kb upstream 5776 true scaffold_246: 25015-30790 Eucalyptus grandis
Eucgr.L01550 1.0kb upstream 1.0kb upstream 1000 false scaffold_246: 29791-30790 Eucalyptus grandis
Eucgr.L01550 1.0kb downstream 1.0kb downstream 5776 true scaffold_246: 24015-29790 Eucalyptus grandis
Eucgr.L01550 1.0kb downstream 1.0kb downstream 1000 false scaffold_246: 24015-25014 Eucalyptus grandis
Eucgr.L01550 2.0kb upstream 2.0kb upstream 6776 true scaffold_246: 25015-31790 Eucalyptus grandis
Eucgr.L01550 2.0kb upstream 2.0kb upstream 2000 false scaffold_246: 29791-31790 Eucalyptus grandis
Eucgr.L01550 2.0kb downstream 2.0kb downstream 6776 true scaffold_246: 23015-29790 Eucalyptus grandis
Eucgr.L01550 2.0kb downstream 2.0kb downstream 2000 false scaffold_246: 23015-25014 Eucalyptus grandis
Eucgr.L01550 5.0kb upstream 5.0kb upstream 9776 true scaffold_246: 25015-34790 Eucalyptus grandis
Eucgr.L01550 5.0kb upstream 5.0kb upstream 5000 false scaffold_246: 29791-34790 Eucalyptus grandis
Eucgr.L01550 5.0kb downstream 5.0kb downstream 9776 true scaffold_246: 20015-29790 Eucalyptus grandis
Eucgr.L01550 5.0kb downstream 5.0kb downstream 5000 false scaffold_246: 20015-25014 Eucalyptus grandis
Eucgr.L01550 10.0kb upstream 10.0kb upstream 14776 true scaffold_246: 25015-39790 Eucalyptus grandis
Eucgr.L01550 10.0kb upstream 10.0kb upstream 10000 false scaffold_246: 29791-39790 Eucalyptus grandis
Eucgr.L01550 10.0kb downstream 10.0kb downstream 14776 true scaffold_246: 15015-29790 Eucalyptus grandis
Eucgr.L01550 10.0kb downstream 10.0kb downstream 10000 false scaffold_246: 15015-25014 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066963 5270 Rosid View MSA
123752354 5271 Pentapetalae View MSA
122795335 5272 Eudicot View MSA
122047253 5273 Angiosperm View MSA
121349872 5274 Embryophyte View MSA
123428275 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.7159 0.0 94.9413 High High
cufflinks 9.32128 0.0 23.124   Low
cufflinks 33.2043 0.0 74.6582 High High
cufflinks 14.3104 0.0 34.2821    
cufflinks 11.1294 0.0 27.0856    
cufflinks 13.0546 0.0 31.2407    

0 Strain