Gene : Eucgr.L03187 E. grandis v2.0
Defline:  (1 of 4) PTHR12948 - NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN Genomic Order:  1
Name:  ? Eucgr.L03187 Secondary Identifier:  ? PAC:32027931
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L03187 0.5kb upstream 0.5kb upstream 4907 true scaffold_2211: 245-5151 Eucalyptus grandis
Eucgr.L03187 0.5kb upstream 0.5kb upstream 500 false scaffold_2211: 4652-5151 Eucalyptus grandis
Eucgr.L03187 0.5kb downstream 0.5kb downstream 4651 true scaffold_2211: 1-4651 Eucalyptus grandis
Eucgr.L03187 0.5kb downstream 0.5kb downstream 244 false scaffold_2211: 1-244 Eucalyptus grandis
Eucgr.L03187 1.0kb upstream 1.0kb upstream 5407 true scaffold_2211: 245-5651 Eucalyptus grandis
Eucgr.L03187 1.0kb upstream 1.0kb upstream 1000 false scaffold_2211: 4652-5651 Eucalyptus grandis
Eucgr.L03187 1.0kb downstream 1.0kb downstream 4651 true scaffold_2211: 1-4651 Eucalyptus grandis
Eucgr.L03187 1.0kb downstream 1.0kb downstream 244 false scaffold_2211: 1-244 Eucalyptus grandis
Eucgr.L03187 2.0kb upstream 2.0kb upstream 6407 true scaffold_2211: 245-6651 Eucalyptus grandis
Eucgr.L03187 2.0kb upstream 2.0kb upstream 2000 false scaffold_2211: 4652-6651 Eucalyptus grandis
Eucgr.L03187 2.0kb downstream 2.0kb downstream 4651 true scaffold_2211: 1-4651 Eucalyptus grandis
Eucgr.L03187 2.0kb downstream 2.0kb downstream 244 false scaffold_2211: 1-244 Eucalyptus grandis
Eucgr.L03187 5.0kb upstream 5.0kb upstream 7059 true scaffold_2211: 245-7303 Eucalyptus grandis
Eucgr.L03187 5.0kb upstream 5.0kb upstream 2652 false scaffold_2211: 4652-7303 Eucalyptus grandis
Eucgr.L03187 5.0kb downstream 5.0kb downstream 4651 true scaffold_2211: 1-4651 Eucalyptus grandis
Eucgr.L03187 5.0kb downstream 5.0kb downstream 244 false scaffold_2211: 1-244 Eucalyptus grandis
Eucgr.L03187 10.0kb upstream 10.0kb upstream 7059 true scaffold_2211: 245-7303 Eucalyptus grandis
Eucgr.L03187 10.0kb upstream 10.0kb upstream 2652 false scaffold_2211: 4652-7303 Eucalyptus grandis
Eucgr.L03187 10.0kb downstream 10.0kb downstream 4651 true scaffold_2211: 1-4651 Eucalyptus grandis
Eucgr.L03187 10.0kb downstream 10.0kb downstream 244 false scaffold_2211: 1-244 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064504 5270 Rosid View MSA
123740631 5271 Pentapetalae View MSA
122788504 5272 Eudicot View MSA
122046197 5273 Angiosperm View MSA
123429148 5275 Viridiplantae View MSA
121344011 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.49398 0.0 11.7514    
cufflinks 1.43372 0.0 4.16402    
cufflinks 4.10994 0.0 10.8048    
cufflinks 2.00362 0.0 5.64043    
cufflinks 0.66748 0.0 2.14163 Low Low
cufflinks 4.29803 0.0 11.3934    

0 Strain