Gene : Eucgr.L03208 E. grandis v2.0
Defline:  (1 of 4) 2.5.1.85 - All-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) / Solanesyl diphosphate synthase Genomic Order:  3
Name:  ? Eucgr.L03208 Secondary Identifier:  ? PAC:32032039
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6520 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L03208 0.5kb upstream 0.5kb upstream 997 true scaffold_2291: 5937-6933 Eucalyptus grandis
Eucgr.L03208 0.5kb upstream 0.5kb upstream 13 false scaffold_2291: 6921-6933 Eucalyptus grandis
Eucgr.L03208 0.5kb downstream 0.5kb downstream 1484 true scaffold_2291: 5437-6920 Eucalyptus grandis
Eucgr.L03208 0.5kb downstream 0.5kb downstream 500 false scaffold_2291: 5437-5936 Eucalyptus grandis
Eucgr.L03208 1.0kb upstream 1.0kb upstream 997 true scaffold_2291: 5937-6933 Eucalyptus grandis
Eucgr.L03208 1.0kb upstream 1.0kb upstream 13 false scaffold_2291: 6921-6933 Eucalyptus grandis
Eucgr.L03208 1.0kb downstream 1.0kb downstream 1984 true scaffold_2291: 4937-6920 Eucalyptus grandis
Eucgr.L03208 1.0kb downstream 1.0kb downstream 1000 false scaffold_2291: 4937-5936 Eucalyptus grandis
Eucgr.L03208 2.0kb upstream 2.0kb upstream 997 true scaffold_2291: 5937-6933 Eucalyptus grandis
Eucgr.L03208 2.0kb upstream 2.0kb upstream 13 false scaffold_2291: 6921-6933 Eucalyptus grandis
Eucgr.L03208 2.0kb downstream 2.0kb downstream 2984 true scaffold_2291: 3937-6920 Eucalyptus grandis
Eucgr.L03208 2.0kb downstream 2.0kb downstream 2000 false scaffold_2291: 3937-5936 Eucalyptus grandis
Eucgr.L03208 5.0kb upstream 5.0kb upstream 997 true scaffold_2291: 5937-6933 Eucalyptus grandis
Eucgr.L03208 5.0kb upstream 5.0kb upstream 13 false scaffold_2291: 6921-6933 Eucalyptus grandis
Eucgr.L03208 5.0kb downstream 5.0kb downstream 5984 true scaffold_2291: 937-6920 Eucalyptus grandis
Eucgr.L03208 5.0kb downstream 5.0kb downstream 5000 false scaffold_2291: 937-5936 Eucalyptus grandis
Eucgr.L03208 10.0kb upstream 10.0kb upstream 997 true scaffold_2291: 5937-6933 Eucalyptus grandis
Eucgr.L03208 10.0kb upstream 10.0kb upstream 13 false scaffold_2291: 6921-6933 Eucalyptus grandis
Eucgr.L03208 10.0kb downstream 10.0kb downstream 6920 true scaffold_2291: 1-6920 Eucalyptus grandis
Eucgr.L03208 10.0kb downstream 10.0kb downstream 5936 false scaffold_2291: 1-5936 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124051358 5270 Rosid View MSA
123745518 5271 Pentapetalae View MSA
122795597 5272 Eudicot View MSA
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.09255 0.0 6.08246    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.36196 0.0 9.2841    
cufflinks 0.407354 0.0 1.44474 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 6.62287 0.0 17.249    

0 Strain