Gene : Eucgr.L03151 E. grandis v2.0
Defline:  (1 of 50) PTHR31225:SF15 - ALPHA-HUMULENE/(-)-(E)-BETA-CARYOPHYLLENE SYNTHASE Genomic Order:  1
Name:  ? Eucgr.L03151 Secondary Identifier:  ? PAC:32052472
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5733 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L03151 0.5kb upstream 0.5kb upstream 1484 true scaffold_2137: 1-1484 Eucalyptus grandis
Eucgr.L03151 0.5kb upstream 0.5kb upstream 293 false scaffold_2137: 1-293 Eucalyptus grandis
Eucgr.L03151 0.5kb downstream 0.5kb downstream 1691 true scaffold_2137: 294-1984 Eucalyptus grandis
Eucgr.L03151 0.5kb downstream 0.5kb downstream 500 false scaffold_2137: 1485-1984 Eucalyptus grandis
Eucgr.L03151 1.0kb upstream 1.0kb upstream 1484 true scaffold_2137: 1-1484 Eucalyptus grandis
Eucgr.L03151 1.0kb upstream 1.0kb upstream 293 false scaffold_2137: 1-293 Eucalyptus grandis
Eucgr.L03151 1.0kb downstream 1.0kb downstream 2191 true scaffold_2137: 294-2484 Eucalyptus grandis
Eucgr.L03151 1.0kb downstream 1.0kb downstream 1000 false scaffold_2137: 1485-2484 Eucalyptus grandis
Eucgr.L03151 2.0kb upstream 2.0kb upstream 1484 true scaffold_2137: 1-1484 Eucalyptus grandis
Eucgr.L03151 2.0kb upstream 2.0kb upstream 293 false scaffold_2137: 1-293 Eucalyptus grandis
Eucgr.L03151 2.0kb downstream 2.0kb downstream 3191 true scaffold_2137: 294-3484 Eucalyptus grandis
Eucgr.L03151 2.0kb downstream 2.0kb downstream 2000 false scaffold_2137: 1485-3484 Eucalyptus grandis
Eucgr.L03151 5.0kb upstream 5.0kb upstream 1484 true scaffold_2137: 1-1484 Eucalyptus grandis
Eucgr.L03151 5.0kb upstream 5.0kb upstream 293 false scaffold_2137: 1-293 Eucalyptus grandis
Eucgr.L03151 5.0kb downstream 5.0kb downstream 6191 true scaffold_2137: 294-6484 Eucalyptus grandis
Eucgr.L03151 5.0kb downstream 5.0kb downstream 5000 false scaffold_2137: 1485-6484 Eucalyptus grandis
Eucgr.L03151 10.0kb upstream 10.0kb upstream 1484 true scaffold_2137: 1-1484 Eucalyptus grandis
Eucgr.L03151 10.0kb upstream 10.0kb upstream 293 false scaffold_2137: 1-293 Eucalyptus grandis
Eucgr.L03151 10.0kb downstream 10.0kb downstream 6945 true scaffold_2137: 294-7238 Eucalyptus grandis
Eucgr.L03151 10.0kb downstream 10.0kb downstream 5754 false scaffold_2137: 1485-7238 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074530 5270 Rosid View MSA
123753426 5271 Pentapetalae View MSA
122797901 5272 Eudicot View MSA
122051661 5273 Angiosperm View MSA
121351720 5274 Embryophyte View MSA
123382290 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.405066 0.0 1.42578 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.898616 0.0 2.83155    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0155352 0.0 0.175975 Low Low

0 Strain