Gene : Eucgr.L01917 E. grandis v2.0
Defline:  (1 of 2) PTHR12820 - VACUOLAR SORTING PROTEIN 53 Genomic Order:  1
Name:  ? Eucgr.L01917 Secondary Identifier:  ? PAC:32035898
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L01917 0.5kb upstream 0.5kb upstream 10528 true scaffold_445: 1-10528 Eucalyptus grandis
Eucgr.L01917 0.5kb upstream 0.5kb upstream 9 false scaffold_445: 1-9 Eucalyptus grandis
Eucgr.L01917 0.5kb downstream 0.5kb downstream 11019 true scaffold_445: 10-11028 Eucalyptus grandis
Eucgr.L01917 0.5kb downstream 0.5kb downstream 500 false scaffold_445: 10529-11028 Eucalyptus grandis
Eucgr.L01917 1.0kb upstream 1.0kb upstream 10528 true scaffold_445: 1-10528 Eucalyptus grandis
Eucgr.L01917 1.0kb upstream 1.0kb upstream 9 false scaffold_445: 1-9 Eucalyptus grandis
Eucgr.L01917 1.0kb downstream 1.0kb downstream 11519 true scaffold_445: 10-11528 Eucalyptus grandis
Eucgr.L01917 1.0kb downstream 1.0kb downstream 1000 false scaffold_445: 10529-11528 Eucalyptus grandis
Eucgr.L01917 2.0kb upstream 2.0kb upstream 10528 true scaffold_445: 1-10528 Eucalyptus grandis
Eucgr.L01917 2.0kb upstream 2.0kb upstream 9 false scaffold_445: 1-9 Eucalyptus grandis
Eucgr.L01917 2.0kb downstream 2.0kb downstream 12519 true scaffold_445: 10-12528 Eucalyptus grandis
Eucgr.L01917 2.0kb downstream 2.0kb downstream 2000 false scaffold_445: 10529-12528 Eucalyptus grandis
Eucgr.L01917 5.0kb upstream 5.0kb upstream 10528 true scaffold_445: 1-10528 Eucalyptus grandis
Eucgr.L01917 5.0kb upstream 5.0kb upstream 9 false scaffold_445: 1-9 Eucalyptus grandis
Eucgr.L01917 5.0kb downstream 5.0kb downstream 15519 true scaffold_445: 10-15528 Eucalyptus grandis
Eucgr.L01917 5.0kb downstream 5.0kb downstream 5000 false scaffold_445: 10529-15528 Eucalyptus grandis
Eucgr.L01917 10.0kb upstream 10.0kb upstream 10528 true scaffold_445: 1-10528 Eucalyptus grandis
Eucgr.L01917 10.0kb upstream 10.0kb upstream 9 false scaffold_445: 1-9 Eucalyptus grandis
Eucgr.L01917 10.0kb downstream 10.0kb downstream 20519 true scaffold_445: 10-20528 Eucalyptus grandis
Eucgr.L01917 10.0kb downstream 10.0kb downstream 10000 false scaffold_445: 10529-20528 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060785 5270 Rosid View MSA
123745504 5271 Pentapetalae View MSA
122792209 5272 Eudicot View MSA
122042616 5273 Angiosperm View MSA
121345322 5274 Embryophyte View MSA
123426739 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.77745 0.0 15.5713    
cufflinks 16.3281 0.0 36.122   High
cufflinks 7.14202 0.0 16.2801    
cufflinks 16.9196 0.0 37.4202   High
cufflinks 9.31396 0.0 20.9317    
cufflinks 4.64276 0.0 11.0742   Low

0 Strain