Gene : Eucgr.L02158 E. grandis v2.0
Defline:  (1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1
Name:  ? Eucgr.L02158 Secondary Identifier:  ? PAC:32057965
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L02158 0.5kb upstream 0.5kb upstream 2852 true scaffold_629: 17443-20294 Eucalyptus grandis
Eucgr.L02158 0.5kb upstream 0.5kb upstream 500 false scaffold_629: 17443-17942 Eucalyptus grandis
Eucgr.L02158 0.5kb downstream 0.5kb downstream 2388 true scaffold_629: 17943-20330 Eucalyptus grandis
Eucgr.L02158 0.5kb downstream 0.5kb downstream 36 false scaffold_629: 20295-20330 Eucalyptus grandis
Eucgr.L02158 1.0kb upstream 1.0kb upstream 3352 true scaffold_629: 16943-20294 Eucalyptus grandis
Eucgr.L02158 1.0kb upstream 1.0kb upstream 1000 false scaffold_629: 16943-17942 Eucalyptus grandis
Eucgr.L02158 1.0kb downstream 1.0kb downstream 2388 true scaffold_629: 17943-20330 Eucalyptus grandis
Eucgr.L02158 1.0kb downstream 1.0kb downstream 36 false scaffold_629: 20295-20330 Eucalyptus grandis
Eucgr.L02158 2.0kb upstream 2.0kb upstream 4352 true scaffold_629: 15943-20294 Eucalyptus grandis
Eucgr.L02158 2.0kb upstream 2.0kb upstream 2000 false scaffold_629: 15943-17942 Eucalyptus grandis
Eucgr.L02158 2.0kb downstream 2.0kb downstream 2388 true scaffold_629: 17943-20330 Eucalyptus grandis
Eucgr.L02158 2.0kb downstream 2.0kb downstream 36 false scaffold_629: 20295-20330 Eucalyptus grandis
Eucgr.L02158 5.0kb upstream 5.0kb upstream 7352 true scaffold_629: 12943-20294 Eucalyptus grandis
Eucgr.L02158 5.0kb upstream 5.0kb upstream 5000 false scaffold_629: 12943-17942 Eucalyptus grandis
Eucgr.L02158 5.0kb downstream 5.0kb downstream 2388 true scaffold_629: 17943-20330 Eucalyptus grandis
Eucgr.L02158 5.0kb downstream 5.0kb downstream 36 false scaffold_629: 20295-20330 Eucalyptus grandis
Eucgr.L02158 10.0kb upstream 10.0kb upstream 12352 true scaffold_629: 7943-20294 Eucalyptus grandis
Eucgr.L02158 10.0kb upstream 10.0kb upstream 10000 false scaffold_629: 7943-17942 Eucalyptus grandis
Eucgr.L02158 10.0kb downstream 10.0kb downstream 2388 true scaffold_629: 17943-20330 Eucalyptus grandis
Eucgr.L02158 10.0kb downstream 10.0kb downstream 36 false scaffold_629: 20295-20330 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124070333 5270 Rosid View MSA
123744746 5271 Pentapetalae View MSA
122794994 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0397353 0.0 0.178617 Low  
cufflinks 0.115293 0.0 0.407308 Low  
cufflinks 0.135773 0.0 0.469238 Low  
cufflinks 0.0339902 0.0 0.156287 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.390878 0.0 1.19478 Low High

0 Strain