Protein Domain : IPR002853

Type:  Family Name:  Transcription factor TFIIE, alpha subunit
Description:  Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit () and the small beta (). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE [].The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow [].This entry represents the conserved amino terminal region of eukaryotic TFIIE-alpha and proteins from archaebacteria (TFE) that are also presumed to be TFIIE-alpha subunits []. Short Name:  TFIIE_asu

0 Child Features

3 Contains

DB identifier Type Name
IPR017919 Domain Transcription factor TFE/TFIIEalpha HTH domain
IPR013083 Domain Zinc finger, RING/FYVE/PHD-type
IPR011991 Domain Winged helix-turn-helix DNA-binding domain

1 Cross References

Identifier
SM00531

0 Found In

1 GO Annotation

GO Term Gene Name
GO:0006367 IPR002853

1 Ontology Annotations

GO Term Gene Name
GO:0006367 IPR002853

0 Parent Features

612 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
114128 D8SCP8 PAC:15416859 Selaginella moellendorffii 472  
evm.model.supercontig_3890.1 PAC:16418990 Carica papaya 239  
evm.model.supercontig_79.50 PAC:16426336 Carica papaya 210  
29118.m000103 B9T7B5 PAC:16802318 Ricinus communis 300  
AT4G20810.1 Q9SVG6 PAC:19644879 Arabidopsis thaliana 416  
AT4G20340.1 F4JUV3 PAC:19644565 Arabidopsis thaliana 475  
AT1G03280.1 Q93ZW3 PAC:19651621 Arabidopsis thaliana 479  
Thhalv10025149m V4MQC7 PAC:20195202 Eutrema salsugineum 461  
Thhalv10023437m V4KIS4 PAC:20201654 Eutrema salsugineum 472  
Ciclev10019993m V4TW95 PAC:20811656 Citrus clementina 474  
Lus10011554 PAC:23140380 Linum usitatissimum 469  
Lus10019269 PAC:23141420 Linum usitatissimum 472  
Potri.015G051000.1 B9N8Y4 PAC:27017154 Populus trichocarpa 472  
Potri.010G102000.4 PAC:26979094 Populus trichocarpa 321  
Potri.010G102000.2 PAC:26979092 Populus trichocarpa 444  
Potri.010G102000.3 PAC:26979093 Populus trichocarpa 347  
Potri.010G102000.1 A0A2K1YRT5 PAC:26979091 Populus trichocarpa 478  
Gorai.001G093700.1 A0A0D2QMT8 PAC:26823964 Gossypium raimondii 483  
Gorai.007G172700.1 A0A0D2PAS0 PAC:26779402 Gossypium raimondii 472  
52835 C1N577 PAC:27340103 Micromonas pusilla CCMP1545 379  
61733 C1FI28 PAC:27397742 Micromonas sp RCC299 437  
29168 A4RRX3 PAC:27417769 Ostreococcus lucimarinus 424  
Thecc1EG002056t1 A0A061DKF1 PAC:27433285 Theobroma cacao 475  
Thecc1EG002056t3 A0A061DME1 PAC:27433286 Theobroma cacao 473  
Thecc1EG002056t2 A0A061DKN5 PAC:27433284 Theobroma cacao 480  
Migut.H01201.1.p A0A022RSX4 PAC:28952458 Mimulus guttatus 475  
Migut.M00376.1.p PAC:28949545 Mimulus guttatus 418  
Araha.5052s0022.1.p PAC:28854077 Arabidopsis halleri 465  
Araha.10984s0004.1.p PAC:28854592 Arabidopsis halleri 471  
Cagra.1062s0056.1.p PAC:28908882 Capsella grandiflora 458  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9389475
            10716934