Gene : Seita.1G046700 S. italica v2.2
Defline:  (1 of 14) PF05910 - Plant protein of unknown function (DUF868) (DUF868) Genomic Order:  467
Name:  ? Seita.1G046700 Secondary Identifier:  ? PAC:32696329
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G046700 0.5kb upstream 0.5kb upstream 1442 true scaffold_1: 4577270-4578711 Setaria italica
Seita.1G046700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4578212-4578711 Setaria italica
Seita.1G046700 0.5kb downstream 0.5kb downstream 1442 true scaffold_1: 4576770-4578211 Setaria italica
Seita.1G046700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4576770-4577269 Setaria italica
Seita.1G046700 1.0kb upstream 1.0kb upstream 1942 true scaffold_1: 4577270-4579211 Setaria italica
Seita.1G046700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4578212-4579211 Setaria italica
Seita.1G046700 1.0kb downstream 1.0kb downstream 1942 true scaffold_1: 4576270-4578211 Setaria italica
Seita.1G046700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4576270-4577269 Setaria italica
Seita.1G046700 2.0kb upstream 2.0kb upstream 2942 true scaffold_1: 4577270-4580211 Setaria italica
Seita.1G046700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4578212-4580211 Setaria italica
Seita.1G046700 2.0kb downstream 2.0kb downstream 2942 true scaffold_1: 4575270-4578211 Setaria italica
Seita.1G046700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4575270-4577269 Setaria italica
Seita.1G046700 5.0kb upstream 5.0kb upstream 5942 true scaffold_1: 4577270-4583211 Setaria italica
Seita.1G046700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4578212-4583211 Setaria italica
Seita.1G046700 5.0kb downstream 5.0kb downstream 5942 true scaffold_1: 4572270-4578211 Setaria italica
Seita.1G046700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4572270-4577269 Setaria italica
Seita.1G046700 10.0kb upstream 10.0kb upstream 10942 true scaffold_1: 4577270-4588211 Setaria italica
Seita.1G046700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4578212-4588211 Setaria italica
Seita.1G046700 10.0kb downstream 10.0kb downstream 10942 true scaffold_1: 4567270-4578211 Setaria italica
Seita.1G046700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4567270-4577269 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182206 5267 Panicoideae View MSA
124577857 5269 Grass View MSA
122048974 5273 Angiosperm View MSA
121311194 5274 Embryophyte View MSA
123348523 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.013     Low Low
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.04     Low  
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.089     Low High
cufflinks 0.117     Low High
cufflinks 0.018     Low  
cufflinks 0.07     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.09     Low High

0 Strain