Gene : Seita.1G048000 S. italica v2.2
Defline:  (1 of 3) PTHR10891:SF574 - CALCIUM-BINDING PROTEIN CML30-RELATED Genomic Order:  480
Name:  ? Seita.1G048000 Secondary Identifier:  ? PAC:32695328
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G048000 0.5kb upstream 0.5kb upstream 4062 true scaffold_1: 4684579-4688640 Setaria italica
Seita.1G048000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4688141-4688640 Setaria italica
Seita.1G048000 0.5kb downstream 0.5kb downstream 4062 true scaffold_1: 4684079-4688140 Setaria italica
Seita.1G048000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4684079-4684578 Setaria italica
Seita.1G048000 1.0kb upstream 1.0kb upstream 4562 true scaffold_1: 4684579-4689140 Setaria italica
Seita.1G048000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4688141-4689140 Setaria italica
Seita.1G048000 1.0kb downstream 1.0kb downstream 4562 true scaffold_1: 4683579-4688140 Setaria italica
Seita.1G048000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4683579-4684578 Setaria italica
Seita.1G048000 2.0kb upstream 2.0kb upstream 5562 true scaffold_1: 4684579-4690140 Setaria italica
Seita.1G048000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4688141-4690140 Setaria italica
Seita.1G048000 2.0kb downstream 2.0kb downstream 5562 true scaffold_1: 4682579-4688140 Setaria italica
Seita.1G048000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4682579-4684578 Setaria italica
Seita.1G048000 5.0kb upstream 5.0kb upstream 8562 true scaffold_1: 4684579-4693140 Setaria italica
Seita.1G048000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4688141-4693140 Setaria italica
Seita.1G048000 5.0kb downstream 5.0kb downstream 8562 true scaffold_1: 4679579-4688140 Setaria italica
Seita.1G048000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4679579-4684578 Setaria italica
Seita.1G048000 10.0kb upstream 10.0kb upstream 13562 true scaffold_1: 4684579-4698140 Setaria italica
Seita.1G048000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4688141-4698140 Setaria italica
Seita.1G048000 10.0kb downstream 10.0kb downstream 13562 true scaffold_1: 4674579-4688140 Setaria italica
Seita.1G048000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4674579-4684578 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041090 5273 Angiosperm View MSA
122197575 5267 Panicoideae View MSA
124576918 5269 Grass View MSA
121346825 5274 Embryophyte View MSA
123425898 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.036     Low  
cufflinks 0.664       High
cufflinks 0.07     Low  
cufflinks 0.064     Low  
cufflinks 0.031     Low  
cufflinks 0.797       High
cufflinks 0.055     Low  
cufflinks 0.089     Low  
cufflinks 0.062     Low  
cufflinks 0.101     Low  
cufflinks 0.066     Low  
cufflinks 0.064     Low  
cufflinks 0.046     Low  
cufflinks 0.067     Low  
cufflinks 0.141        
cufflinks 0.023     Low Low
cufflinks 0.088     Low  
cufflinks 0.005     Low Low
cufflinks 0.048     Low  
cufflinks 0.149        

0 Strain