Gene : Seita.1G055200 S. italica v2.2
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  552
Name:  ? Seita.1G055200 Secondary Identifier:  ? PAC:32696434
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CAROTENOID-PWY Setaria italica pathologic  
Sitalica PWY-5943 Setaria italica pathologic  
Sitalica PWY-5947 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G055200 0.5kb upstream 0.5kb upstream 1988 true scaffold_1: 5340457-5342444 Setaria italica
Seita.1G055200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5340457-5340956 Setaria italica
Seita.1G055200 0.5kb downstream 0.5kb downstream 1988 true scaffold_1: 5340957-5342944 Setaria italica
Seita.1G055200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5342445-5342944 Setaria italica
Seita.1G055200 1.0kb upstream 1.0kb upstream 2488 true scaffold_1: 5339957-5342444 Setaria italica
Seita.1G055200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5339957-5340956 Setaria italica
Seita.1G055200 1.0kb downstream 1.0kb downstream 2488 true scaffold_1: 5340957-5343444 Setaria italica
Seita.1G055200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5342445-5343444 Setaria italica
Seita.1G055200 2.0kb upstream 2.0kb upstream 3488 true scaffold_1: 5338957-5342444 Setaria italica
Seita.1G055200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5338957-5340956 Setaria italica
Seita.1G055200 2.0kb downstream 2.0kb downstream 3488 true scaffold_1: 5340957-5344444 Setaria italica
Seita.1G055200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5342445-5344444 Setaria italica
Seita.1G055200 5.0kb upstream 5.0kb upstream 6488 true scaffold_1: 5335957-5342444 Setaria italica
Seita.1G055200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5335957-5340956 Setaria italica
Seita.1G055200 5.0kb downstream 5.0kb downstream 6488 true scaffold_1: 5340957-5347444 Setaria italica
Seita.1G055200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5342445-5347444 Setaria italica
Seita.1G055200 10.0kb upstream 10.0kb upstream 11488 true scaffold_1: 5330957-5342444 Setaria italica
Seita.1G055200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5330957-5340956 Setaria italica
Seita.1G055200 10.0kb downstream 10.0kb downstream 11488 true scaffold_1: 5340957-5352444 Setaria italica
Seita.1G055200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5342445-5352444 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177716 5267 Panicoideae View MSA
124579476 5269 Grass View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.479        
cufflinks 3.168        
cufflinks 8.811        
cufflinks 10.022        
cufflinks 7.74        
cufflinks 3.586        
cufflinks 8.23        
cufflinks 11.24       High
cufflinks 8.685        
cufflinks 6.55        
cufflinks 3.7        
cufflinks 2.331       Low
cufflinks 2.743       Low
cufflinks 10.105        
cufflinks 2.512       Low
cufflinks 12.767     High High
cufflinks 2.938        
cufflinks 3.851        
cufflinks 15.291     High High
cufflinks 2.881       Low

0 Strain