Gene : Seita.1G056000 S. italica v2.2
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  560
Name:  ? Seita.1G056000 Secondary Identifier:  ? PAC:32694157
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G056000 0.5kb upstream 0.5kb upstream 4201 true scaffold_1: 5418424-5422624 Setaria italica
Seita.1G056000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5418424-5418923 Setaria italica
Seita.1G056000 0.5kb downstream 0.5kb downstream 4201 true scaffold_1: 5418924-5423124 Setaria italica
Seita.1G056000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5422625-5423124 Setaria italica
Seita.1G056000 1.0kb upstream 1.0kb upstream 4701 true scaffold_1: 5417924-5422624 Setaria italica
Seita.1G056000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5417924-5418923 Setaria italica
Seita.1G056000 1.0kb downstream 1.0kb downstream 4701 true scaffold_1: 5418924-5423624 Setaria italica
Seita.1G056000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5422625-5423624 Setaria italica
Seita.1G056000 2.0kb upstream 2.0kb upstream 5701 true scaffold_1: 5416924-5422624 Setaria italica
Seita.1G056000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5416924-5418923 Setaria italica
Seita.1G056000 2.0kb downstream 2.0kb downstream 5701 true scaffold_1: 5418924-5424624 Setaria italica
Seita.1G056000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5422625-5424624 Setaria italica
Seita.1G056000 5.0kb upstream 5.0kb upstream 8701 true scaffold_1: 5413924-5422624 Setaria italica
Seita.1G056000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5413924-5418923 Setaria italica
Seita.1G056000 5.0kb downstream 5.0kb downstream 8701 true scaffold_1: 5418924-5427624 Setaria italica
Seita.1G056000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5422625-5427624 Setaria italica
Seita.1G056000 10.0kb upstream 10.0kb upstream 13701 true scaffold_1: 5408924-5422624 Setaria italica
Seita.1G056000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5408924-5418923 Setaria italica
Seita.1G056000 10.0kb downstream 10.0kb downstream 13701 true scaffold_1: 5418924-5432624 Setaria italica
Seita.1G056000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5422625-5432624 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027025 5273 Angiosperm View MSA
122177029 5267 Panicoideae View MSA
124586891 5269 Grass View MSA
121296748 5274 Embryophyte View MSA
123334866 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.73        
cufflinks 2.191        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.168        
cufflinks 1.77        
cufflinks 0.66        
cufflinks 0.47        
cufflinks 1.18        
cufflinks 4.154       High
cufflinks 2.096        
cufflinks 1.377        
cufflinks 1.264        
cufflinks 0.015     Low Low
cufflinks 1.664        
cufflinks 0.485        
cufflinks 1.09        
cufflinks 0.253        
cufflinks 0.036     Low Low
cufflinks 2.162        

0 Strain