Gene : Seita.1G063800 S. italica v2.2
Defline:  (1 of 1) PTHR10621:SF9 - F12F1.16 PROTEIN-RELATED Genomic Order:  638
Name:  ? Seita.1G063800 Secondary Identifier:  ? PAC:32694529
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G063800 0.5kb upstream 0.5kb upstream 5569 true scaffold_1: 6023692-6029260 Setaria italica
Seita.1G063800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6028761-6029260 Setaria italica
Seita.1G063800 0.5kb downstream 0.5kb downstream 5569 true scaffold_1: 6023192-6028760 Setaria italica
Seita.1G063800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6023192-6023691 Setaria italica
Seita.1G063800 1.0kb upstream 1.0kb upstream 6069 true scaffold_1: 6023692-6029760 Setaria italica
Seita.1G063800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6028761-6029760 Setaria italica
Seita.1G063800 1.0kb downstream 1.0kb downstream 6069 true scaffold_1: 6022692-6028760 Setaria italica
Seita.1G063800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6022692-6023691 Setaria italica
Seita.1G063800 2.0kb upstream 2.0kb upstream 7069 true scaffold_1: 6023692-6030760 Setaria italica
Seita.1G063800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6028761-6030760 Setaria italica
Seita.1G063800 2.0kb downstream 2.0kb downstream 7069 true scaffold_1: 6021692-6028760 Setaria italica
Seita.1G063800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6021692-6023691 Setaria italica
Seita.1G063800 5.0kb upstream 5.0kb upstream 10069 true scaffold_1: 6023692-6033760 Setaria italica
Seita.1G063800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6028761-6033760 Setaria italica
Seita.1G063800 5.0kb downstream 5.0kb downstream 10069 true scaffold_1: 6018692-6028760 Setaria italica
Seita.1G063800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6018692-6023691 Setaria italica
Seita.1G063800 10.0kb upstream 10.0kb upstream 15069 true scaffold_1: 6023692-6038760 Setaria italica
Seita.1G063800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6028761-6038760 Setaria italica
Seita.1G063800 10.0kb downstream 10.0kb downstream 15069 true scaffold_1: 6013692-6028760 Setaria italica
Seita.1G063800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6013692-6023691 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186602 5267 Panicoideae View MSA
124571419 5269 Grass View MSA
122046102 5273 Angiosperm View MSA
121350140 5274 Embryophyte View MSA
123423951 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.577        
cufflinks 9.177       High
cufflinks 0.849       Low
cufflinks 0.577       Low
cufflinks 0.714       Low
cufflinks 10.41       High
cufflinks 3.912        
cufflinks 6.558        
cufflinks 3.855        
cufflinks 6.707        
cufflinks 6.455        
cufflinks 5.422        
cufflinks 4.234        
cufflinks 1.309        
cufflinks 6.285        
cufflinks 2.537        
cufflinks 6.964        
cufflinks 2.998        
cufflinks 0.463       Low
cufflinks 7.41        

0 Strain