Gene : Seita.1G071600 S. italica v2.2
Defline:  (1 of 2) PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE Genomic Order:  716
Name:  ? Seita.1G071600 Secondary Identifier:  ? PAC:32694992
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ANAEROFRUCAT-PWY Setaria italica pathologic  
Sitalica ANAGLYCOLYSIS-PWY Setaria italica pathologic  
Sitalica GLUCONEO-PWY Setaria italica pathologic  
Sitalica PWY-1042 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica SUCSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G071600 0.5kb upstream 0.5kb upstream 5099 true scaffold_1: 6559309-6564407 Setaria italica
Seita.1G071600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6563908-6564407 Setaria italica
Seita.1G071600 0.5kb downstream 0.5kb downstream 5099 true scaffold_1: 6558809-6563907 Setaria italica
Seita.1G071600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6558809-6559308 Setaria italica
Seita.1G071600 1.0kb upstream 1.0kb upstream 5599 true scaffold_1: 6559309-6564907 Setaria italica
Seita.1G071600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6563908-6564907 Setaria italica
Seita.1G071600 1.0kb downstream 1.0kb downstream 5599 true scaffold_1: 6558309-6563907 Setaria italica
Seita.1G071600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6558309-6559308 Setaria italica
Seita.1G071600 2.0kb upstream 2.0kb upstream 6599 true scaffold_1: 6559309-6565907 Setaria italica
Seita.1G071600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6563908-6565907 Setaria italica
Seita.1G071600 2.0kb downstream 2.0kb downstream 6599 true scaffold_1: 6557309-6563907 Setaria italica
Seita.1G071600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6557309-6559308 Setaria italica
Seita.1G071600 5.0kb upstream 5.0kb upstream 9599 true scaffold_1: 6559309-6568907 Setaria italica
Seita.1G071600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6563908-6568907 Setaria italica
Seita.1G071600 5.0kb downstream 5.0kb downstream 9599 true scaffold_1: 6554309-6563907 Setaria italica
Seita.1G071600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6554309-6559308 Setaria italica
Seita.1G071600 10.0kb upstream 10.0kb upstream 14599 true scaffold_1: 6559309-6573907 Setaria italica
Seita.1G071600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6563908-6573907 Setaria italica
Seita.1G071600 10.0kb downstream 10.0kb downstream 14599 true scaffold_1: 6549309-6563907 Setaria italica
Seita.1G071600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6549309-6559308 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175260 5267 Panicoideae View MSA
124572618 5269 Grass View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.405     High  
cufflinks 36.776     High  
cufflinks 11.947     High  
cufflinks 8.924       Low
cufflinks 9.76       Low
cufflinks 40.096     High  
cufflinks 19.166     High  
cufflinks 32.145     High  
cufflinks 21.35     High  
cufflinks 33.675     High  
cufflinks 38.449     High  
cufflinks 56.41     High High
cufflinks 34.988     High  
cufflinks 18.685     High  
cufflinks 50.642     High  
cufflinks 9.39       Low
cufflinks 75.145     High High
cufflinks 5.151       Low
cufflinks 12.078     High  
cufflinks 65.34     High High

0 Strain