Gene : Seita.1G071700 S. italica v2.2
Defline:  (1 of 1) PF01464 - Transglycosylase SLT domain (SLT) Genomic Order:  717
Name:  ? Seita.1G071700 Secondary Identifier:  ? PAC:32694696
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G071700 0.5kb upstream 0.5kb upstream 8258 true scaffold_1: 6567554-6575811 Setaria italica
Seita.1G071700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6567554-6568053 Setaria italica
Seita.1G071700 0.5kb downstream 0.5kb downstream 8258 true scaffold_1: 6568054-6576311 Setaria italica
Seita.1G071700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6575812-6576311 Setaria italica
Seita.1G071700 1.0kb upstream 1.0kb upstream 8758 true scaffold_1: 6567054-6575811 Setaria italica
Seita.1G071700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6567054-6568053 Setaria italica
Seita.1G071700 1.0kb downstream 1.0kb downstream 8758 true scaffold_1: 6568054-6576811 Setaria italica
Seita.1G071700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6575812-6576811 Setaria italica
Seita.1G071700 2.0kb upstream 2.0kb upstream 9758 true scaffold_1: 6566054-6575811 Setaria italica
Seita.1G071700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6566054-6568053 Setaria italica
Seita.1G071700 2.0kb downstream 2.0kb downstream 9758 true scaffold_1: 6568054-6577811 Setaria italica
Seita.1G071700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6575812-6577811 Setaria italica
Seita.1G071700 5.0kb upstream 5.0kb upstream 12758 true scaffold_1: 6563054-6575811 Setaria italica
Seita.1G071700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6563054-6568053 Setaria italica
Seita.1G071700 5.0kb downstream 5.0kb downstream 12758 true scaffold_1: 6568054-6580811 Setaria italica
Seita.1G071700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6575812-6580811 Setaria italica
Seita.1G071700 10.0kb upstream 10.0kb upstream 17758 true scaffold_1: 6558054-6575811 Setaria italica
Seita.1G071700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6558054-6568053 Setaria italica
Seita.1G071700 10.0kb downstream 10.0kb downstream 17758 true scaffold_1: 6568054-6585811 Setaria italica
Seita.1G071700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6575812-6585811 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026274 5273 Angiosperm View MSA
122181470 5267 Panicoideae View MSA
124578354 5269 Grass View MSA
121350872 5274 Embryophyte View MSA
123381917 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.188        
cufflinks 1.152       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 1.112       High
cufflinks 0.499        
cufflinks 0.437        
cufflinks 0.387        
cufflinks 0.234     Low  
cufflinks 0.267        
cufflinks 0.033     Low  
cufflinks 0.723       High
cufflinks 0.003     Low Low
cufflinks 0.12     Low  
cufflinks 0.068     Low  
cufflinks 0.039     Low  
cufflinks 0.035     Low  
cufflinks 0.014     Low Low
cufflinks 0.081     Low  

0 Strain