Gene : Seita.1G081300 S. italica v2.2
Defline:  (1 of 1) PTHR11216//PTHR11216:SF83 - EH DOMAIN Genomic Order:  813
Name:  ? Seita.1G081300 Secondary Identifier:  ? PAC:32694321
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G081300 0.5kb upstream 0.5kb upstream 4854 true scaffold_1: 7304659-7309512 Setaria italica
Seita.1G081300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7304659-7305158 Setaria italica
Seita.1G081300 0.5kb downstream 0.5kb downstream 4854 true scaffold_1: 7305159-7310012 Setaria italica
Seita.1G081300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7309513-7310012 Setaria italica
Seita.1G081300 1.0kb upstream 1.0kb upstream 5354 true scaffold_1: 7304159-7309512 Setaria italica
Seita.1G081300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7304159-7305158 Setaria italica
Seita.1G081300 1.0kb downstream 1.0kb downstream 5354 true scaffold_1: 7305159-7310512 Setaria italica
Seita.1G081300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7309513-7310512 Setaria italica
Seita.1G081300 2.0kb upstream 2.0kb upstream 6354 true scaffold_1: 7303159-7309512 Setaria italica
Seita.1G081300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7303159-7305158 Setaria italica
Seita.1G081300 2.0kb downstream 2.0kb downstream 6354 true scaffold_1: 7305159-7311512 Setaria italica
Seita.1G081300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7309513-7311512 Setaria italica
Seita.1G081300 5.0kb upstream 5.0kb upstream 9354 true scaffold_1: 7300159-7309512 Setaria italica
Seita.1G081300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7300159-7305158 Setaria italica
Seita.1G081300 5.0kb downstream 5.0kb downstream 9354 true scaffold_1: 7305159-7314512 Setaria italica
Seita.1G081300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7309513-7314512 Setaria italica
Seita.1G081300 10.0kb upstream 10.0kb upstream 14354 true scaffold_1: 7295159-7309512 Setaria italica
Seita.1G081300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7295159-7305158 Setaria italica
Seita.1G081300 10.0kb downstream 10.0kb downstream 14354 true scaffold_1: 7305159-7319512 Setaria italica
Seita.1G081300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7309513-7319512 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192720 5267 Panicoideae View MSA
124580075 5269 Grass View MSA
122047763 5273 Angiosperm View MSA
123428944 5275 Viridiplantae View MSA
121344712 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.309        
cufflinks 3.061        
cufflinks 0.083       Low
cufflinks 0.156       Low
cufflinks 0.175       Low
cufflinks 2.89        
cufflinks 2.427        
cufflinks 5.503        
cufflinks 2.446        
cufflinks 5.956        
cufflinks 5.614        
cufflinks 3.467        
cufflinks 3.295        
cufflinks 0.041     Low Low
cufflinks 5.317        
cufflinks 0.537        
cufflinks 6.167        
cufflinks 0.415        
cufflinks 0.085     Low Low
cufflinks 5.978        

0 Strain