Gene : Seita.1G004400 S. italica v2.2
Defline:  (1 of 2) 1.1.1.27 - L-lactate dehydrogenase / L-lactic dehydrogenase Genomic Order:  44
Name:  ? Seita.1G004400 Secondary Identifier:  ? PAC:32697281
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ANAEROFRUCAT-PWY Setaria italica pathologic  
Sitalica PWY-5481 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G004400 0.5kb upstream 0.5kb upstream 1778 true scaffold_1: 293220-294997 Setaria italica
Seita.1G004400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 293220-293719 Setaria italica
Seita.1G004400 0.5kb downstream 0.5kb downstream 1778 true scaffold_1: 293720-295497 Setaria italica
Seita.1G004400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 294998-295497 Setaria italica
Seita.1G004400 1.0kb upstream 1.0kb upstream 2278 true scaffold_1: 292720-294997 Setaria italica
Seita.1G004400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 292720-293719 Setaria italica
Seita.1G004400 1.0kb downstream 1.0kb downstream 2278 true scaffold_1: 293720-295997 Setaria italica
Seita.1G004400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 294998-295997 Setaria italica
Seita.1G004400 2.0kb upstream 2.0kb upstream 3278 true scaffold_1: 291720-294997 Setaria italica
Seita.1G004400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 291720-293719 Setaria italica
Seita.1G004400 2.0kb downstream 2.0kb downstream 3278 true scaffold_1: 293720-296997 Setaria italica
Seita.1G004400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 294998-296997 Setaria italica
Seita.1G004400 5.0kb upstream 5.0kb upstream 6278 true scaffold_1: 288720-294997 Setaria italica
Seita.1G004400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 288720-293719 Setaria italica
Seita.1G004400 5.0kb downstream 5.0kb downstream 6278 true scaffold_1: 293720-299997 Setaria italica
Seita.1G004400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 294998-299997 Setaria italica
Seita.1G004400 10.0kb upstream 10.0kb upstream 11278 true scaffold_1: 283720-294997 Setaria italica
Seita.1G004400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 283720-293719 Setaria italica
Seita.1G004400 10.0kb downstream 10.0kb downstream 11278 true scaffold_1: 293720-304997 Setaria italica
Seita.1G004400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 294998-304997 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196123 5267 Panicoideae View MSA
124573849 5269 Grass View MSA
122045770 5273 Angiosperm View MSA
121350532 5274 Embryophyte View MSA
123381776 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.625        
cufflinks 0.325        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.04     Low  
cufflinks 0.027     Low  
cufflinks 0.14        
cufflinks 0.06     Low  
cufflinks 0.046     Low  
cufflinks 0.106     Low  
cufflinks 0.518        
cufflinks 0.207        
cufflinks 10.412       High
cufflinks 0.026     Low Low
cufflinks 0.114     Low  
cufflinks 0.549        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.553        
cufflinks 0.014     Low Low
cufflinks 0.015     Low Low
cufflinks 0.344        

0 Strain