Gene : Seita.1G004700 S. italica v2.2
Defline:  (1 of 123) PF07762 - Protein of unknown function (DUF1618) (DUF1618) Genomic Order:  47
Name:  ? Seita.1G004700 Secondary Identifier:  ? PAC:32694151
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G004700 0.5kb upstream 0.5kb upstream 1736 true scaffold_1: 323451-325186 Setaria italica
Seita.1G004700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 323451-323950 Setaria italica
Seita.1G004700 0.5kb downstream 0.5kb downstream 1736 true scaffold_1: 323951-325686 Setaria italica
Seita.1G004700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 325187-325686 Setaria italica
Seita.1G004700 1.0kb upstream 1.0kb upstream 2236 true scaffold_1: 322951-325186 Setaria italica
Seita.1G004700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 322951-323950 Setaria italica
Seita.1G004700 1.0kb downstream 1.0kb downstream 2236 true scaffold_1: 323951-326186 Setaria italica
Seita.1G004700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 325187-326186 Setaria italica
Seita.1G004700 2.0kb upstream 2.0kb upstream 3236 true scaffold_1: 321951-325186 Setaria italica
Seita.1G004700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 321951-323950 Setaria italica
Seita.1G004700 2.0kb downstream 2.0kb downstream 3236 true scaffold_1: 323951-327186 Setaria italica
Seita.1G004700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 325187-327186 Setaria italica
Seita.1G004700 5.0kb upstream 5.0kb upstream 6236 true scaffold_1: 318951-325186 Setaria italica
Seita.1G004700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 318951-323950 Setaria italica
Seita.1G004700 5.0kb downstream 5.0kb downstream 6236 true scaffold_1: 323951-330186 Setaria italica
Seita.1G004700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 325187-330186 Setaria italica
Seita.1G004700 10.0kb upstream 10.0kb upstream 11236 true scaffold_1: 313951-325186 Setaria italica
Seita.1G004700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 313951-323950 Setaria italica
Seita.1G004700 10.0kb downstream 10.0kb downstream 11236 true scaffold_1: 323951-335186 Setaria italica
Seita.1G004700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 325187-335186 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994770 5273 Angiosperm View MSA
122199307 5267 Panicoideae View MSA
124585583 5269 Grass View MSA
121264986 5274 Embryophyte View MSA
123303402 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.029     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low  
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.117     Low High
cufflinks 0.036     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low Low
cufflinks 0.017     Low  
cufflinks 0.046     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain