Gene : Seita.1G003800 S. italica v2.2
Defline:  (1 of 1) PTHR11089:SF43 - NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  38
Name:  ? Seita.1G003800 Secondary Identifier:  ? PAC:32697651
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6845 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G003800 0.5kb upstream 0.5kb upstream 4391 true scaffold_1: 261486-265876 Setaria italica
Seita.1G003800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 261486-261985 Setaria italica
Seita.1G003800 0.5kb downstream 0.5kb downstream 4391 true scaffold_1: 261986-266376 Setaria italica
Seita.1G003800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 265877-266376 Setaria italica
Seita.1G003800 1.0kb upstream 1.0kb upstream 4891 true scaffold_1: 260986-265876 Setaria italica
Seita.1G003800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 260986-261985 Setaria italica
Seita.1G003800 1.0kb downstream 1.0kb downstream 4891 true scaffold_1: 261986-266876 Setaria italica
Seita.1G003800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 265877-266876 Setaria italica
Seita.1G003800 2.0kb upstream 2.0kb upstream 5891 true scaffold_1: 259986-265876 Setaria italica
Seita.1G003800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 259986-261985 Setaria italica
Seita.1G003800 2.0kb downstream 2.0kb downstream 5891 true scaffold_1: 261986-267876 Setaria italica
Seita.1G003800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 265877-267876 Setaria italica
Seita.1G003800 5.0kb upstream 5.0kb upstream 8891 true scaffold_1: 256986-265876 Setaria italica
Seita.1G003800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 256986-261985 Setaria italica
Seita.1G003800 5.0kb downstream 5.0kb downstream 8891 true scaffold_1: 261986-270876 Setaria italica
Seita.1G003800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 265877-270876 Setaria italica
Seita.1G003800 10.0kb upstream 10.0kb upstream 13891 true scaffold_1: 251986-265876 Setaria italica
Seita.1G003800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 251986-261985 Setaria italica
Seita.1G003800 10.0kb downstream 10.0kb downstream 13891 true scaffold_1: 261986-275876 Setaria italica
Seita.1G003800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 265877-275876 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187050 5267 Panicoideae View MSA
124578495 5269 Grass View MSA
122045244 5273 Angiosperm View MSA
121346425 5274 Embryophyte View MSA
123426230 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.604     High  
cufflinks 20.654     High  
cufflinks 18.25     High  
cufflinks 13.05     High  
cufflinks 18.431     High  
cufflinks 24.399     High High
cufflinks 20.537     High  
cufflinks 27.221     High High
cufflinks 29.728     High High
cufflinks 11.175        
cufflinks 11.074        
cufflinks 6.15       Low
cufflinks 6.81       Low
cufflinks 24.165     High High
cufflinks 6.236       Low
cufflinks 17.977     High  
cufflinks 7.066       Low
cufflinks 11.682     High  
cufflinks 10.254        
cufflinks 7.777       Low

0 Strain