Gene : Seita.1G008700 S. italica v2.2
Defline:  (1 of 1) 6.3.4.19 - tRNA(Ile)-lysidine synthetase / Isoleucine-specific transfer ribonucleate lysidine synthetase Genomic Order:  87
Name:  ? Seita.1G008700 Secondary Identifier:  ? PAC:32697288
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G008700 0.5kb upstream 0.5kb upstream 7232 true scaffold_1: 641566-648797 Setaria italica
Seita.1G008700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 648298-648797 Setaria italica
Seita.1G008700 0.5kb downstream 0.5kb downstream 7232 true scaffold_1: 641066-648297 Setaria italica
Seita.1G008700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 641066-641565 Setaria italica
Seita.1G008700 1.0kb upstream 1.0kb upstream 7732 true scaffold_1: 641566-649297 Setaria italica
Seita.1G008700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 648298-649297 Setaria italica
Seita.1G008700 1.0kb downstream 1.0kb downstream 7732 true scaffold_1: 640566-648297 Setaria italica
Seita.1G008700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 640566-641565 Setaria italica
Seita.1G008700 2.0kb upstream 2.0kb upstream 8732 true scaffold_1: 641566-650297 Setaria italica
Seita.1G008700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 648298-650297 Setaria italica
Seita.1G008700 2.0kb downstream 2.0kb downstream 8732 true scaffold_1: 639566-648297 Setaria italica
Seita.1G008700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 639566-641565 Setaria italica
Seita.1G008700 5.0kb upstream 5.0kb upstream 11732 true scaffold_1: 641566-653297 Setaria italica
Seita.1G008700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 648298-653297 Setaria italica
Seita.1G008700 5.0kb downstream 5.0kb downstream 11732 true scaffold_1: 636566-648297 Setaria italica
Seita.1G008700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 636566-641565 Setaria italica
Seita.1G008700 10.0kb upstream 10.0kb upstream 16732 true scaffold_1: 641566-658297 Setaria italica
Seita.1G008700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 648298-658297 Setaria italica
Seita.1G008700 10.0kb downstream 10.0kb downstream 16732 true scaffold_1: 631566-648297 Setaria italica
Seita.1G008700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 631566-641565 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026304 5273 Angiosperm View MSA
122186244 5267 Panicoideae View MSA
124572710 5269 Grass View MSA
121345916 5274 Embryophyte View MSA
123380288 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.126        
cufflinks 1.205        
cufflinks 0.478        
cufflinks 0.241       Low
cufflinks 0.493        
cufflinks 1.12        
cufflinks 1.339       High
cufflinks 1.111        
cufflinks 1.441       High
cufflinks 0.609        
cufflinks 0.899        
cufflinks 0.339       Low
cufflinks 0.288       Low
cufflinks 0.577        
cufflinks 0.477        
cufflinks 1.648       High
cufflinks 0.407        
cufflinks 0.897        
cufflinks 0.222       Low
cufflinks 0.454        

0 Strain