Gene : Seita.1G013800 S. italica v2.2
Defline:  (1 of 1) PTHR31339:SF3 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  138
Name:  ? Seita.1G013800 Secondary Identifier:  ? PAC:32698356
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G013800 0.5kb upstream 0.5kb upstream 5288 true scaffold_1: 1158256-1163543 Setaria italica
Seita.1G013800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1163044-1163543 Setaria italica
Seita.1G013800 0.5kb downstream 0.5kb downstream 5288 true scaffold_1: 1157756-1163043 Setaria italica
Seita.1G013800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1157756-1158255 Setaria italica
Seita.1G013800 1.0kb upstream 1.0kb upstream 5788 true scaffold_1: 1158256-1164043 Setaria italica
Seita.1G013800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1163044-1164043 Setaria italica
Seita.1G013800 1.0kb downstream 1.0kb downstream 5788 true scaffold_1: 1157256-1163043 Setaria italica
Seita.1G013800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1157256-1158255 Setaria italica
Seita.1G013800 2.0kb upstream 2.0kb upstream 6788 true scaffold_1: 1158256-1165043 Setaria italica
Seita.1G013800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1163044-1165043 Setaria italica
Seita.1G013800 2.0kb downstream 2.0kb downstream 6788 true scaffold_1: 1156256-1163043 Setaria italica
Seita.1G013800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1156256-1158255 Setaria italica
Seita.1G013800 5.0kb upstream 5.0kb upstream 9788 true scaffold_1: 1158256-1168043 Setaria italica
Seita.1G013800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1163044-1168043 Setaria italica
Seita.1G013800 5.0kb downstream 5.0kb downstream 9788 true scaffold_1: 1153256-1163043 Setaria italica
Seita.1G013800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1153256-1158255 Setaria italica
Seita.1G013800 10.0kb upstream 10.0kb upstream 14788 true scaffold_1: 1158256-1173043 Setaria italica
Seita.1G013800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1163044-1173043 Setaria italica
Seita.1G013800 10.0kb downstream 10.0kb downstream 14788 true scaffold_1: 1148256-1163043 Setaria italica
Seita.1G013800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1148256-1158255 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181090 5267 Panicoideae View MSA
124578304 5269 Grass View MSA
122043550 5273 Angiosperm View MSA
121310146 5274 Embryophyte View MSA
123347715 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.095       High
cufflinks 0.852        
cufflinks 0.047     Low Low
cufflinks 0.115       Low
cufflinks 0.225        
cufflinks 1.194        
cufflinks 2.804       High
cufflinks 2.305        
cufflinks 3.904       High
cufflinks 2.588       High
cufflinks 2.323        
cufflinks 0.199        
cufflinks 0.097     Low Low
cufflinks 0.048     Low Low
cufflinks 0.54        
cufflinks 1.143        
cufflinks 0.447        
cufflinks 0.626        
cufflinks 0.048     Low Low
cufflinks 0.509        

0 Strain