Gene : Seita.1G020500 S. italica v2.2
Defline:  (1 of 2) PTHR24006:SF503 - TRAF-LIKE FAMILY PROTEIN-RELATED Genomic Order:  205
Name:  ? Seita.1G020500 Secondary Identifier:  ? PAC:32696102
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G020500 0.5kb upstream 0.5kb upstream 10440 true scaffold_1: 1756996-1767435 Setaria italica
Seita.1G020500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1756996-1757495 Setaria italica
Seita.1G020500 0.5kb downstream 0.5kb downstream 10440 true scaffold_1: 1757496-1767935 Setaria italica
Seita.1G020500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1767436-1767935 Setaria italica
Seita.1G020500 1.0kb upstream 1.0kb upstream 10940 true scaffold_1: 1756496-1767435 Setaria italica
Seita.1G020500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1756496-1757495 Setaria italica
Seita.1G020500 1.0kb downstream 1.0kb downstream 10940 true scaffold_1: 1757496-1768435 Setaria italica
Seita.1G020500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1767436-1768435 Setaria italica
Seita.1G020500 2.0kb upstream 2.0kb upstream 11940 true scaffold_1: 1755496-1767435 Setaria italica
Seita.1G020500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1755496-1757495 Setaria italica
Seita.1G020500 2.0kb downstream 2.0kb downstream 11940 true scaffold_1: 1757496-1769435 Setaria italica
Seita.1G020500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1767436-1769435 Setaria italica
Seita.1G020500 5.0kb upstream 5.0kb upstream 14940 true scaffold_1: 1752496-1767435 Setaria italica
Seita.1G020500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1752496-1757495 Setaria italica
Seita.1G020500 5.0kb downstream 5.0kb downstream 14940 true scaffold_1: 1757496-1772435 Setaria italica
Seita.1G020500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1767436-1772435 Setaria italica
Seita.1G020500 10.0kb upstream 10.0kb upstream 19940 true scaffold_1: 1747496-1767435 Setaria italica
Seita.1G020500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1747496-1757495 Setaria italica
Seita.1G020500 10.0kb downstream 10.0kb downstream 19940 true scaffold_1: 1757496-1777435 Setaria italica
Seita.1G020500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1767436-1777435 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177025 5267 Panicoideae View MSA
124586406 5269 Grass View MSA
122046939 5273 Angiosperm View MSA
121350818 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.393        
cufflinks 9.413       High
cufflinks 4.616        
cufflinks 3.661        
cufflinks 3.478        
cufflinks 9.431       High
cufflinks 6.812       High
cufflinks 4.658        
cufflinks 5.545        
cufflinks 2.398       Low
cufflinks 5.071        
cufflinks 3.087        
cufflinks 2.94       Low
cufflinks 3.93        
cufflinks 4.686        
cufflinks 5.362        
cufflinks 3.362        
cufflinks 3.383        
cufflinks 3.345        
cufflinks 3.768        

0 Strain