Gene : Seita.1G024600 S. italica v2.2
Defline:  (1 of 1) PTHR15629//PTHR15629:SF13 - SH3YL1 PROTEIN Genomic Order:  246
Name:  ? Seita.1G024600 Secondary Identifier:  ? PAC:32697773
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G024600 0.5kb upstream 0.5kb upstream 4833 true scaffold_1: 2179917-2184749 Setaria italica
Seita.1G024600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 2184250-2184749 Setaria italica
Seita.1G024600 0.5kb downstream 0.5kb downstream 4833 true scaffold_1: 2179417-2184249 Setaria italica
Seita.1G024600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 2179417-2179916 Setaria italica
Seita.1G024600 1.0kb upstream 1.0kb upstream 5333 true scaffold_1: 2179917-2185249 Setaria italica
Seita.1G024600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 2184250-2185249 Setaria italica
Seita.1G024600 1.0kb downstream 1.0kb downstream 5333 true scaffold_1: 2178917-2184249 Setaria italica
Seita.1G024600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 2178917-2179916 Setaria italica
Seita.1G024600 2.0kb upstream 2.0kb upstream 6333 true scaffold_1: 2179917-2186249 Setaria italica
Seita.1G024600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 2184250-2186249 Setaria italica
Seita.1G024600 2.0kb downstream 2.0kb downstream 6333 true scaffold_1: 2177917-2184249 Setaria italica
Seita.1G024600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 2177917-2179916 Setaria italica
Seita.1G024600 5.0kb upstream 5.0kb upstream 9333 true scaffold_1: 2179917-2189249 Setaria italica
Seita.1G024600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 2184250-2189249 Setaria italica
Seita.1G024600 5.0kb downstream 5.0kb downstream 9333 true scaffold_1: 2174917-2184249 Setaria italica
Seita.1G024600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 2174917-2179916 Setaria italica
Seita.1G024600 10.0kb upstream 10.0kb upstream 14333 true scaffold_1: 2179917-2194249 Setaria italica
Seita.1G024600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 2184250-2194249 Setaria italica
Seita.1G024600 10.0kb downstream 10.0kb downstream 14333 true scaffold_1: 2169917-2184249 Setaria italica
Seita.1G024600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 2169917-2179916 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182926 5267 Panicoideae View MSA
124586482 5269 Grass View MSA
122047876 5273 Angiosperm View MSA
121349418 5274 Embryophyte View MSA
123426176 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.335        
cufflinks 4.027       Low
cufflinks 6.477        
cufflinks 6.747        
cufflinks 5.23        
cufflinks 3.966       Low
cufflinks 5.168        
cufflinks 3.626       Low
cufflinks 3.874       Low
cufflinks 4.64        
cufflinks 6.865        
cufflinks 7.518       High
cufflinks 9.224       High
cufflinks 5.515        
cufflinks 8.366       High
cufflinks 4.913        
cufflinks 5.725        
cufflinks 5.851        
cufflinks 5.989        
cufflinks 5.842        

0 Strain