Gene : Seita.1G037700 S. italica v2.2
Defline:  (1 of 2) PTHR10625//PTHR10625:SF127 - HISTONE DEACETYLASE Genomic Order:  377
Name:  ? Seita.1G037700 Secondary Identifier:  ? PAC:32694974
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G037700 0.5kb upstream 0.5kb upstream 4696 true scaffold_1: 3710524-3715219 Setaria italica
Seita.1G037700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 3714720-3715219 Setaria italica
Seita.1G037700 0.5kb downstream 0.5kb downstream 4696 true scaffold_1: 3710024-3714719 Setaria italica
Seita.1G037700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 3710024-3710523 Setaria italica
Seita.1G037700 1.0kb upstream 1.0kb upstream 5196 true scaffold_1: 3710524-3715719 Setaria italica
Seita.1G037700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 3714720-3715719 Setaria italica
Seita.1G037700 1.0kb downstream 1.0kb downstream 5196 true scaffold_1: 3709524-3714719 Setaria italica
Seita.1G037700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 3709524-3710523 Setaria italica
Seita.1G037700 2.0kb upstream 2.0kb upstream 6196 true scaffold_1: 3710524-3716719 Setaria italica
Seita.1G037700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 3714720-3716719 Setaria italica
Seita.1G037700 2.0kb downstream 2.0kb downstream 6196 true scaffold_1: 3708524-3714719 Setaria italica
Seita.1G037700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 3708524-3710523 Setaria italica
Seita.1G037700 5.0kb upstream 5.0kb upstream 9196 true scaffold_1: 3710524-3719719 Setaria italica
Seita.1G037700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 3714720-3719719 Setaria italica
Seita.1G037700 5.0kb downstream 5.0kb downstream 9196 true scaffold_1: 3705524-3714719 Setaria italica
Seita.1G037700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 3705524-3710523 Setaria italica
Seita.1G037700 10.0kb upstream 10.0kb upstream 14196 true scaffold_1: 3710524-3724719 Setaria italica
Seita.1G037700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 3714720-3724719 Setaria italica
Seita.1G037700 10.0kb downstream 10.0kb downstream 14196 true scaffold_1: 3700524-3714719 Setaria italica
Seita.1G037700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 3700524-3710523 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195830 5267 Panicoideae View MSA
124586021 5269 Grass View MSA
122042529 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.345       High
cufflinks 11.295        
cufflinks 9.059        
cufflinks 7.716       Low
cufflinks 8.371       Low
cufflinks 12.125        
cufflinks 9.227        
cufflinks 8.632       Low
cufflinks 7.515       Low
cufflinks 9.253        
cufflinks 11.939        
cufflinks 9.936        
cufflinks 11.995        
cufflinks 10.796        
cufflinks 13.219       High
cufflinks 11.561        
cufflinks 10.88        
cufflinks 11.823     High  
cufflinks 11.954     High  
cufflinks 10.012        

0 Strain