Gene : Seita.1G040200 S. italica v2.2
Defline:  (1 of 3) PTHR19876:SF6 - COATOMER SUBUNIT BETA'-1 Genomic Order:  402
Name:  ? Seita.1G040200 Secondary Identifier:  ? PAC:32697913
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G040200 0.5kb upstream 0.5kb upstream 10455 true scaffold_1: 3910017-3920471 Setaria italica
Seita.1G040200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 3910017-3910516 Setaria italica
Seita.1G040200 0.5kb downstream 0.5kb downstream 10455 true scaffold_1: 3910517-3920971 Setaria italica
Seita.1G040200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 3920472-3920971 Setaria italica
Seita.1G040200 1.0kb upstream 1.0kb upstream 10955 true scaffold_1: 3909517-3920471 Setaria italica
Seita.1G040200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 3909517-3910516 Setaria italica
Seita.1G040200 1.0kb downstream 1.0kb downstream 10955 true scaffold_1: 3910517-3921471 Setaria italica
Seita.1G040200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 3920472-3921471 Setaria italica
Seita.1G040200 2.0kb upstream 2.0kb upstream 11955 true scaffold_1: 3908517-3920471 Setaria italica
Seita.1G040200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 3908517-3910516 Setaria italica
Seita.1G040200 2.0kb downstream 2.0kb downstream 11955 true scaffold_1: 3910517-3922471 Setaria italica
Seita.1G040200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 3920472-3922471 Setaria italica
Seita.1G040200 5.0kb upstream 5.0kb upstream 14955 true scaffold_1: 3905517-3920471 Setaria italica
Seita.1G040200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 3905517-3910516 Setaria italica
Seita.1G040200 5.0kb downstream 5.0kb downstream 14955 true scaffold_1: 3910517-3925471 Setaria italica
Seita.1G040200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 3920472-3925471 Setaria italica
Seita.1G040200 10.0kb upstream 10.0kb upstream 19955 true scaffold_1: 3900517-3920471 Setaria italica
Seita.1G040200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 3900517-3910516 Setaria italica
Seita.1G040200 10.0kb downstream 10.0kb downstream 19955 true scaffold_1: 3910517-3930471 Setaria italica
Seita.1G040200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 3920472-3930471 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196447 5267 Panicoideae View MSA
124569399 5269 Grass View MSA
122046089 5273 Angiosperm View MSA
121350905 5274 Embryophyte View MSA
123424044 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.241     High High
cufflinks 18.572     High High
cufflinks 7.572       Low
cufflinks 5.631       Low
cufflinks 5.937       Low
cufflinks 18.105     High  
cufflinks 12.856        
cufflinks 12.428        
cufflinks 11.068        
cufflinks 7.646       Low
cufflinks 19.195     High High
cufflinks 17.417     High  
cufflinks 11.487        
cufflinks 8.598        
cufflinks 19.227     High High
cufflinks 10.517        
cufflinks 16.342     High  
cufflinks 11.85     High  
cufflinks 7.644       Low
cufflinks 18.821     High High

0 Strain