Gene : Seita.1G120100 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1201
Name:  ? Seita.1G120100 Secondary Identifier:  ? PAC:32694729
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G120100 0.5kb upstream 0.5kb upstream 3259 true scaffold_1: 10388556-10391814 Setaria italica
Seita.1G120100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10388556-10389055 Setaria italica
Seita.1G120100 0.5kb downstream 0.5kb downstream 3259 true scaffold_1: 10389056-10392314 Setaria italica
Seita.1G120100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10391815-10392314 Setaria italica
Seita.1G120100 1.0kb upstream 1.0kb upstream 3759 true scaffold_1: 10388056-10391814 Setaria italica
Seita.1G120100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10388056-10389055 Setaria italica
Seita.1G120100 1.0kb downstream 1.0kb downstream 3759 true scaffold_1: 10389056-10392814 Setaria italica
Seita.1G120100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10391815-10392814 Setaria italica
Seita.1G120100 2.0kb upstream 2.0kb upstream 4759 true scaffold_1: 10387056-10391814 Setaria italica
Seita.1G120100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10387056-10389055 Setaria italica
Seita.1G120100 2.0kb downstream 2.0kb downstream 4759 true scaffold_1: 10389056-10393814 Setaria italica
Seita.1G120100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10391815-10393814 Setaria italica
Seita.1G120100 5.0kb upstream 5.0kb upstream 7759 true scaffold_1: 10384056-10391814 Setaria italica
Seita.1G120100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10384056-10389055 Setaria italica
Seita.1G120100 5.0kb downstream 5.0kb downstream 7759 true scaffold_1: 10389056-10396814 Setaria italica
Seita.1G120100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10391815-10396814 Setaria italica
Seita.1G120100 10.0kb upstream 10.0kb upstream 12759 true scaffold_1: 10379056-10391814 Setaria italica
Seita.1G120100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10379056-10389055 Setaria italica
Seita.1G120100 10.0kb downstream 10.0kb downstream 12759 true scaffold_1: 10389056-10401814 Setaria italica
Seita.1G120100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10391815-10401814 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179945 5267 Panicoideae View MSA
124571480 5269 Grass View MSA
122046453 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310608 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.37        
cufflinks 13.278     High  
cufflinks 5.958        
cufflinks 2.546       Low
cufflinks 6.181        
cufflinks 13.934     High High
cufflinks 8.073        
cufflinks 9.514        
cufflinks 11.163        
cufflinks 8.487        
cufflinks 13.079        
cufflinks 10.697        
cufflinks 5.147        
cufflinks 6.837        
cufflinks 13.655       High
cufflinks 5.939        
cufflinks 14.135     High High
cufflinks 7.995        
cufflinks 3.593       Low
cufflinks 15.302     High High

0 Strain