Gene : Seita.1G126400 S. italica v2.2
Defline:  (1 of 1) 2.7.11.12 - cGMP-dependent protein kinase / PKG II Genomic Order:  1264
Name:  ? Seita.1G126400 Secondary Identifier:  ? PAC:32698289
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G126400 0.5kb upstream 0.5kb upstream 8527 true scaffold_1: 11199911-11208437 Setaria italica
Seita.1G126400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11199911-11200410 Setaria italica
Seita.1G126400 0.5kb downstream 0.5kb downstream 8527 true scaffold_1: 11200411-11208937 Setaria italica
Seita.1G126400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11208438-11208937 Setaria italica
Seita.1G126400 1.0kb upstream 1.0kb upstream 9027 true scaffold_1: 11199411-11208437 Setaria italica
Seita.1G126400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11199411-11200410 Setaria italica
Seita.1G126400 1.0kb downstream 1.0kb downstream 9027 true scaffold_1: 11200411-11209437 Setaria italica
Seita.1G126400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11208438-11209437 Setaria italica
Seita.1G126400 2.0kb upstream 2.0kb upstream 10027 true scaffold_1: 11198411-11208437 Setaria italica
Seita.1G126400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11198411-11200410 Setaria italica
Seita.1G126400 2.0kb downstream 2.0kb downstream 10027 true scaffold_1: 11200411-11210437 Setaria italica
Seita.1G126400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11208438-11210437 Setaria italica
Seita.1G126400 5.0kb upstream 5.0kb upstream 13027 true scaffold_1: 11195411-11208437 Setaria italica
Seita.1G126400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11195411-11200410 Setaria italica
Seita.1G126400 5.0kb downstream 5.0kb downstream 13027 true scaffold_1: 11200411-11213437 Setaria italica
Seita.1G126400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11208438-11213437 Setaria italica
Seita.1G126400 10.0kb upstream 10.0kb upstream 18027 true scaffold_1: 11190411-11208437 Setaria italica
Seita.1G126400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11190411-11200410 Setaria italica
Seita.1G126400 10.0kb downstream 10.0kb downstream 18027 true scaffold_1: 11200411-11218437 Setaria italica
Seita.1G126400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11208438-11218437 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040865 5273 Angiosperm View MSA
122179146 5267 Panicoideae View MSA
124576816 5269 Grass View MSA
121348161 5274 Embryophyte View MSA
123427796 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.728     High  
cufflinks 18.409     High  
cufflinks 28.885     High  
cufflinks 24.801     High  
cufflinks 25.853     High  
cufflinks 23.395     High  
cufflinks 41.669     High High
cufflinks 22.663     High  
cufflinks 24.902     High  
cufflinks 6.437       Low
cufflinks 27.411     High  
cufflinks 6.139       Low
cufflinks 10.236        
cufflinks 23.086     High  
cufflinks 16.217     High  
cufflinks 62.165     High High
cufflinks 8.404       Low
cufflinks 10.208        
cufflinks 37.669     High High
cufflinks 9.603       Low

0 Strain