Gene : Seita.1G140200 S. italica v2.2
Defline:  (1 of 4) PTHR11993 - NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT Genomic Order:  1402
Name:  ? Seita.1G140200 Secondary Identifier:  ? PAC:32695596
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G140200 0.5kb upstream 0.5kb upstream 6552 true scaffold_1: 14621610-14628161 Setaria italica
Seita.1G140200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 14621610-14622109 Setaria italica
Seita.1G140200 0.5kb downstream 0.5kb downstream 6552 true scaffold_1: 14622110-14628661 Setaria italica
Seita.1G140200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 14628162-14628661 Setaria italica
Seita.1G140200 1.0kb upstream 1.0kb upstream 7052 true scaffold_1: 14621110-14628161 Setaria italica
Seita.1G140200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 14621110-14622109 Setaria italica
Seita.1G140200 1.0kb downstream 1.0kb downstream 7052 true scaffold_1: 14622110-14629161 Setaria italica
Seita.1G140200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 14628162-14629161 Setaria italica
Seita.1G140200 2.0kb upstream 2.0kb upstream 8052 true scaffold_1: 14620110-14628161 Setaria italica
Seita.1G140200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 14620110-14622109 Setaria italica
Seita.1G140200 2.0kb downstream 2.0kb downstream 8052 true scaffold_1: 14622110-14630161 Setaria italica
Seita.1G140200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 14628162-14630161 Setaria italica
Seita.1G140200 5.0kb upstream 5.0kb upstream 11052 true scaffold_1: 14617110-14628161 Setaria italica
Seita.1G140200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 14617110-14622109 Setaria italica
Seita.1G140200 5.0kb downstream 5.0kb downstream 11052 true scaffold_1: 14622110-14633161 Setaria italica
Seita.1G140200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 14628162-14633161 Setaria italica
Seita.1G140200 10.0kb upstream 10.0kb upstream 16052 true scaffold_1: 14612110-14628161 Setaria italica
Seita.1G140200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 14612110-14622109 Setaria italica
Seita.1G140200 10.0kb downstream 10.0kb downstream 16052 true scaffold_1: 14622110-14638161 Setaria italica
Seita.1G140200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 14628162-14638161 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121796042 5273 Angiosperm View MSA
122055844 5267 Panicoideae View MSA
124355592 5269 Grass View MSA
121350081 5274 Embryophyte View MSA
123381572 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.046     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain