Gene : Seita.1G101500 S. italica v2.2
Defline:  (1 of 1) PTHR10210//PTHR10210:SF56 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE Genomic Order:  1015
Name:  ? Seita.1G101500 Secondary Identifier:  ? PAC:32696133
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-662 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G101500 0.5kb upstream 0.5kb upstream 4740 true scaffold_1: 8800345-8805084 Setaria italica
Seita.1G101500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8800345-8800844 Setaria italica
Seita.1G101500 0.5kb downstream 0.5kb downstream 4740 true scaffold_1: 8800845-8805584 Setaria italica
Seita.1G101500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8805085-8805584 Setaria italica
Seita.1G101500 1.0kb upstream 1.0kb upstream 5240 true scaffold_1: 8799845-8805084 Setaria italica
Seita.1G101500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8799845-8800844 Setaria italica
Seita.1G101500 1.0kb downstream 1.0kb downstream 5240 true scaffold_1: 8800845-8806084 Setaria italica
Seita.1G101500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8805085-8806084 Setaria italica
Seita.1G101500 2.0kb upstream 2.0kb upstream 6240 true scaffold_1: 8798845-8805084 Setaria italica
Seita.1G101500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8798845-8800844 Setaria italica
Seita.1G101500 2.0kb downstream 2.0kb downstream 6240 true scaffold_1: 8800845-8807084 Setaria italica
Seita.1G101500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8805085-8807084 Setaria italica
Seita.1G101500 5.0kb upstream 5.0kb upstream 9240 true scaffold_1: 8795845-8805084 Setaria italica
Seita.1G101500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8795845-8800844 Setaria italica
Seita.1G101500 5.0kb downstream 5.0kb downstream 9240 true scaffold_1: 8800845-8810084 Setaria italica
Seita.1G101500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8805085-8810084 Setaria italica
Seita.1G101500 10.0kb upstream 10.0kb upstream 14240 true scaffold_1: 8790845-8805084 Setaria italica
Seita.1G101500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8790845-8800844 Setaria italica
Seita.1G101500 10.0kb downstream 10.0kb downstream 14240 true scaffold_1: 8800845-8815084 Setaria italica
Seita.1G101500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8805085-8815084 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181109 5267 Panicoideae View MSA
124589455 5269 Grass View MSA
122042217 5273 Angiosperm View MSA
121347994 5274 Embryophyte View MSA
123427852 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.03        
cufflinks 14.533     High  
cufflinks 11.75     High  
cufflinks 8.079       Low
cufflinks 7.745       Low
cufflinks 16.046     High High
cufflinks 14.454     High  
cufflinks 13.257        
cufflinks 20.294     High High
cufflinks 10.1        
cufflinks 9.329        
cufflinks 9.417        
cufflinks 8.449       Low
cufflinks 19.354     High High
cufflinks 10.695        
cufflinks 11.222        
cufflinks 13.28        
cufflinks 10.984        
cufflinks 6.408       Low
cufflinks 12.022        

0 Strain