Gene : Seita.1G110900 S. italica v2.2
Defline:  (1 of 453) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1109
Name:  ? Seita.1G110900 Secondary Identifier:  ? PAC:32697608
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G110900 0.5kb upstream 0.5kb upstream 1670 true scaffold_1: 9694688-9696357 Setaria italica
Seita.1G110900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9694688-9695187 Setaria italica
Seita.1G110900 0.5kb downstream 0.5kb downstream 1670 true scaffold_1: 9695188-9696857 Setaria italica
Seita.1G110900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9696358-9696857 Setaria italica
Seita.1G110900 1.0kb upstream 1.0kb upstream 2170 true scaffold_1: 9694188-9696357 Setaria italica
Seita.1G110900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9694188-9695187 Setaria italica
Seita.1G110900 1.0kb downstream 1.0kb downstream 2170 true scaffold_1: 9695188-9697357 Setaria italica
Seita.1G110900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9696358-9697357 Setaria italica
Seita.1G110900 2.0kb upstream 2.0kb upstream 3170 true scaffold_1: 9693188-9696357 Setaria italica
Seita.1G110900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9693188-9695187 Setaria italica
Seita.1G110900 2.0kb downstream 2.0kb downstream 3170 true scaffold_1: 9695188-9698357 Setaria italica
Seita.1G110900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9696358-9698357 Setaria italica
Seita.1G110900 5.0kb upstream 5.0kb upstream 6170 true scaffold_1: 9690188-9696357 Setaria italica
Seita.1G110900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9690188-9695187 Setaria italica
Seita.1G110900 5.0kb downstream 5.0kb downstream 6170 true scaffold_1: 9695188-9701357 Setaria italica
Seita.1G110900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9696358-9701357 Setaria italica
Seita.1G110900 10.0kb upstream 10.0kb upstream 11170 true scaffold_1: 9685188-9696357 Setaria italica
Seita.1G110900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9685188-9695187 Setaria italica
Seita.1G110900 10.0kb downstream 10.0kb downstream 11170 true scaffold_1: 9695188-9706357 Setaria italica
Seita.1G110900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9696358-9706357 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189217 5267 Panicoideae View MSA
124574674 5269 Grass View MSA
122046913 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.653        
cufflinks 3.961       High
cufflinks 2.357        
cufflinks 1.517       Low
cufflinks 1.352       Low
cufflinks 4.538       High
cufflinks 2.283        
cufflinks 3.452        
cufflinks 1.934        
cufflinks 2.956        
cufflinks 3.45        
cufflinks 2.821        
cufflinks 1.858       Low
cufflinks 3.598        
cufflinks 3.122        
cufflinks 2.406        
cufflinks 4.573       High
cufflinks 2.725        
cufflinks 2.036        
cufflinks 2.742        

0 Strain