Gene : Seita.1G202000 S. italica v2.2
Defline:  (1 of 2) PTHR15217 - WILMS' TUMOR 1-ASSOCIATING PROTEIN Genomic Order:  2020
Name:  ? Seita.1G202000 Secondary Identifier:  ? PAC:32696519
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G202000 0.5kb upstream 0.5kb upstream 8694 true scaffold_1: 28173250-28181943 Setaria italica
Seita.1G202000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 28181444-28181943 Setaria italica
Seita.1G202000 0.5kb downstream 0.5kb downstream 8694 true scaffold_1: 28172750-28181443 Setaria italica
Seita.1G202000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 28172750-28173249 Setaria italica
Seita.1G202000 1.0kb upstream 1.0kb upstream 9194 true scaffold_1: 28173250-28182443 Setaria italica
Seita.1G202000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 28181444-28182443 Setaria italica
Seita.1G202000 1.0kb downstream 1.0kb downstream 9194 true scaffold_1: 28172250-28181443 Setaria italica
Seita.1G202000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 28172250-28173249 Setaria italica
Seita.1G202000 2.0kb upstream 2.0kb upstream 10194 true scaffold_1: 28173250-28183443 Setaria italica
Seita.1G202000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 28181444-28183443 Setaria italica
Seita.1G202000 2.0kb downstream 2.0kb downstream 10194 true scaffold_1: 28171250-28181443 Setaria italica
Seita.1G202000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 28171250-28173249 Setaria italica
Seita.1G202000 5.0kb upstream 5.0kb upstream 13194 true scaffold_1: 28173250-28186443 Setaria italica
Seita.1G202000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28181444-28186443 Setaria italica
Seita.1G202000 5.0kb downstream 5.0kb downstream 13194 true scaffold_1: 28168250-28181443 Setaria italica
Seita.1G202000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 28168250-28173249 Setaria italica
Seita.1G202000 10.0kb upstream 10.0kb upstream 18194 true scaffold_1: 28173250-28191443 Setaria italica
Seita.1G202000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28181444-28191443 Setaria italica
Seita.1G202000 10.0kb downstream 10.0kb downstream 18194 true scaffold_1: 28163250-28181443 Setaria italica
Seita.1G202000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 28163250-28173249 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199048 5267 Panicoideae View MSA
124569086 5269 Grass View MSA
122047600 5273 Angiosperm View MSA
123429059 5275 Viridiplantae View MSA
121346918 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.231       High
cufflinks 1.921        
cufflinks 0.958       Low
cufflinks 0.877       Low
cufflinks 1.198        
cufflinks 2.092        
cufflinks 1.448        
cufflinks 2.11        
cufflinks 1.936        
cufflinks 2.763       High
cufflinks 1.872        
cufflinks 1.826        
cufflinks 1.328        
cufflinks 1.45        
cufflinks 1.58        
cufflinks 1.542        
cufflinks 2.047        
cufflinks 1.622        
cufflinks 1.03       Low
cufflinks 1.573        

0 Strain