Gene : Seita.1G205500 S. italica v2.2
Genomic Order:  2055 Name:  ? Seita.1G205500
Secondary Identifier:  ? PAC:32696258
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G205500 0.5kb upstream 0.5kb upstream 1119 true scaffold_1: 28471028-28472146 Setaria italica
Seita.1G205500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 28471028-28471527 Setaria italica
Seita.1G205500 0.5kb downstream 0.5kb downstream 1119 true scaffold_1: 28471528-28472646 Setaria italica
Seita.1G205500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 28472147-28472646 Setaria italica
Seita.1G205500 1.0kb upstream 1.0kb upstream 1619 true scaffold_1: 28470528-28472146 Setaria italica
Seita.1G205500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 28470528-28471527 Setaria italica
Seita.1G205500 1.0kb downstream 1.0kb downstream 1619 true scaffold_1: 28471528-28473146 Setaria italica
Seita.1G205500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 28472147-28473146 Setaria italica
Seita.1G205500 2.0kb upstream 2.0kb upstream 2619 true scaffold_1: 28469528-28472146 Setaria italica
Seita.1G205500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 28469528-28471527 Setaria italica
Seita.1G205500 2.0kb downstream 2.0kb downstream 2619 true scaffold_1: 28471528-28474146 Setaria italica
Seita.1G205500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 28472147-28474146 Setaria italica
Seita.1G205500 5.0kb upstream 5.0kb upstream 5619 true scaffold_1: 28466528-28472146 Setaria italica
Seita.1G205500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28466528-28471527 Setaria italica
Seita.1G205500 5.0kb downstream 5.0kb downstream 5619 true scaffold_1: 28471528-28477146 Setaria italica
Seita.1G205500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 28472147-28477146 Setaria italica
Seita.1G205500 10.0kb upstream 10.0kb upstream 10619 true scaffold_1: 28461528-28472146 Setaria italica
Seita.1G205500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28461528-28471527 Setaria italica
Seita.1G205500 10.0kb downstream 10.0kb downstream 10619 true scaffold_1: 28471528-28482146 Setaria italica
Seita.1G205500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 28472147-28482146 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121793154 5273 Angiosperm Singleton cluster - no MSA
122052449 5267 Panicoideae Singleton cluster - no MSA
124352376 5269 Grass Singleton cluster - no MSA
121064337 5274 Embryophyte Singleton cluster - no MSA
123104013 5275 Viridiplantae Singleton cluster - no MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.105     Low  
cufflinks 0.04     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low Low
cufflinks 0.058     Low  
cufflinks 0.026     Low Low
cufflinks 0.069     Low  
cufflinks 0.026     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.11     Low  
cufflinks 0.371       High
cufflinks 0.098     Low  
cufflinks 0.068     Low  
cufflinks 0.139       High
cufflinks 0.056     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.083     Low  

0 Strain