Gene : Seita.1G221900 S. italica v2.2
Defline:  (1 of 31) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  2219
Name:  ? Seita.1G221900 Secondary Identifier:  ? PAC:32695434
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G221900 0.5kb upstream 0.5kb upstream 2443 true scaffold_1: 30054337-30056779 Setaria italica
Seita.1G221900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30054337-30054836 Setaria italica
Seita.1G221900 0.5kb downstream 0.5kb downstream 2443 true scaffold_1: 30054837-30057279 Setaria italica
Seita.1G221900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30056780-30057279 Setaria italica
Seita.1G221900 1.0kb upstream 1.0kb upstream 2943 true scaffold_1: 30053837-30056779 Setaria italica
Seita.1G221900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30053837-30054836 Setaria italica
Seita.1G221900 1.0kb downstream 1.0kb downstream 2943 true scaffold_1: 30054837-30057779 Setaria italica
Seita.1G221900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30056780-30057779 Setaria italica
Seita.1G221900 2.0kb upstream 2.0kb upstream 3943 true scaffold_1: 30052837-30056779 Setaria italica
Seita.1G221900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30052837-30054836 Setaria italica
Seita.1G221900 2.0kb downstream 2.0kb downstream 3943 true scaffold_1: 30054837-30058779 Setaria italica
Seita.1G221900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30056780-30058779 Setaria italica
Seita.1G221900 5.0kb upstream 5.0kb upstream 6943 true scaffold_1: 30049837-30056779 Setaria italica
Seita.1G221900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30049837-30054836 Setaria italica
Seita.1G221900 5.0kb downstream 5.0kb downstream 6943 true scaffold_1: 30054837-30061779 Setaria italica
Seita.1G221900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30056780-30061779 Setaria italica
Seita.1G221900 10.0kb upstream 10.0kb upstream 11943 true scaffold_1: 30044837-30056779 Setaria italica
Seita.1G221900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30044837-30054836 Setaria italica
Seita.1G221900 10.0kb downstream 10.0kb downstream 11943 true scaffold_1: 30054837-30066779 Setaria italica
Seita.1G221900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30056780-30066779 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183343 5267 Panicoideae View MSA
124573961 5269 Grass View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.44        
cufflinks 2.625       High
cufflinks 0.843        
cufflinks 0.436       Low
cufflinks 0.795        
cufflinks 2.183       High
cufflinks 0.946        
cufflinks 1.376        
cufflinks 1.086        
cufflinks 1.004        
cufflinks 1.502        
cufflinks 1.403        
cufflinks 0.722       Low
cufflinks 1.028        
cufflinks 1.613        
cufflinks 0.985        
cufflinks 1.66        
cufflinks 1.333        
cufflinks 0.703       Low
cufflinks 1.503        

0 Strain