Gene : Seita.1G230800 S. italica v2.2
Defline:  (1 of 1) PTHR14499//PTHR14499:SF75 - POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING Genomic Order:  2308
Name:  ? Seita.1G230800 Secondary Identifier:  ? PAC:32695289
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G230800 0.5kb upstream 0.5kb upstream 1901 true scaffold_1: 30695353-30697253 Setaria italica
Seita.1G230800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30696754-30697253 Setaria italica
Seita.1G230800 0.5kb downstream 0.5kb downstream 1901 true scaffold_1: 30694853-30696753 Setaria italica
Seita.1G230800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30694853-30695352 Setaria italica
Seita.1G230800 1.0kb upstream 1.0kb upstream 2401 true scaffold_1: 30695353-30697753 Setaria italica
Seita.1G230800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30696754-30697753 Setaria italica
Seita.1G230800 1.0kb downstream 1.0kb downstream 2401 true scaffold_1: 30694353-30696753 Setaria italica
Seita.1G230800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30694353-30695352 Setaria italica
Seita.1G230800 2.0kb upstream 2.0kb upstream 3401 true scaffold_1: 30695353-30698753 Setaria italica
Seita.1G230800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30696754-30698753 Setaria italica
Seita.1G230800 2.0kb downstream 2.0kb downstream 3401 true scaffold_1: 30693353-30696753 Setaria italica
Seita.1G230800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30693353-30695352 Setaria italica
Seita.1G230800 5.0kb upstream 5.0kb upstream 6401 true scaffold_1: 30695353-30701753 Setaria italica
Seita.1G230800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30696754-30701753 Setaria italica
Seita.1G230800 5.0kb downstream 5.0kb downstream 6401 true scaffold_1: 30690353-30696753 Setaria italica
Seita.1G230800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30690353-30695352 Setaria italica
Seita.1G230800 10.0kb upstream 10.0kb upstream 11401 true scaffold_1: 30695353-30706753 Setaria italica
Seita.1G230800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30696754-30706753 Setaria italica
Seita.1G230800 10.0kb downstream 10.0kb downstream 11401 true scaffold_1: 30685353-30696753 Setaria italica
Seita.1G230800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30685353-30695352 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185327 5267 Panicoideae View MSA
124572503 5269 Grass View MSA
122045449 5273 Angiosperm View MSA
121344030 5274 Embryophyte View MSA
123379962 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.202        
cufflinks 0.883       Low
cufflinks 6.214        
cufflinks 19.287     High High
cufflinks 5.782        
cufflinks 0.975       Low
cufflinks 1.342        
cufflinks 1.201        
cufflinks 0.557       Low
cufflinks 3.216        
cufflinks 1.059       Low
cufflinks 10.429       High
cufflinks 8.902       High
cufflinks 7.569        
cufflinks 1.933        
cufflinks 1.712        
cufflinks 4.723        
cufflinks 5.16        
cufflinks 5.468        
cufflinks 2.553        

0 Strain