Gene : Seita.1G241000 S. italica v2.2
Defline:  (1 of 2) PTHR11390:SF27 - DNA TOPOISOMERASE Genomic Order:  2410
Name:  ? Seita.1G241000 Secondary Identifier:  ? PAC:32697459
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G241000 0.5kb upstream 0.5kb upstream 20496 true scaffold_1: 31855493-31875988 Setaria italica
Seita.1G241000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 31855493-31855992 Setaria italica
Seita.1G241000 0.5kb downstream 0.5kb downstream 20496 true scaffold_1: 31855993-31876488 Setaria italica
Seita.1G241000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 31875989-31876488 Setaria italica
Seita.1G241000 1.0kb upstream 1.0kb upstream 20996 true scaffold_1: 31854993-31875988 Setaria italica
Seita.1G241000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 31854993-31855992 Setaria italica
Seita.1G241000 1.0kb downstream 1.0kb downstream 20996 true scaffold_1: 31855993-31876988 Setaria italica
Seita.1G241000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 31875989-31876988 Setaria italica
Seita.1G241000 2.0kb upstream 2.0kb upstream 21996 true scaffold_1: 31853993-31875988 Setaria italica
Seita.1G241000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 31853993-31855992 Setaria italica
Seita.1G241000 2.0kb downstream 2.0kb downstream 21996 true scaffold_1: 31855993-31877988 Setaria italica
Seita.1G241000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 31875989-31877988 Setaria italica
Seita.1G241000 5.0kb upstream 5.0kb upstream 24996 true scaffold_1: 31850993-31875988 Setaria italica
Seita.1G241000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 31850993-31855992 Setaria italica
Seita.1G241000 5.0kb downstream 5.0kb downstream 24996 true scaffold_1: 31855993-31880988 Setaria italica
Seita.1G241000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 31875989-31880988 Setaria italica
Seita.1G241000 10.0kb upstream 10.0kb upstream 29996 true scaffold_1: 31845993-31875988 Setaria italica
Seita.1G241000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 31845993-31855992 Setaria italica
Seita.1G241000 10.0kb downstream 10.0kb downstream 29996 true scaffold_1: 31855993-31885988 Setaria italica
Seita.1G241000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 31875989-31885988 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177747 5267 Panicoideae View MSA
124577365 5269 Grass View MSA
122047422 5273 Angiosperm View MSA
121351439 5274 Embryophyte View MSA
123426817 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.145        
cufflinks 1.913        
cufflinks 2.331        
cufflinks 1.084       Low
cufflinks 1.309        
cufflinks 1.997        
cufflinks 2.031        
cufflinks 2.295        
cufflinks 3.524       High
cufflinks 1.181       Low
cufflinks 1.949        
cufflinks 1.251        
cufflinks 0.915       Low
cufflinks 2.517       High
cufflinks 1.558        
cufflinks 2.503       High
cufflinks 1.494        
cufflinks 1.775        
cufflinks 1.078       Low
cufflinks 1.486        

0 Strain