Gene : Seita.1G159800 S. italica v2.2
Defline:  (1 of 2) PTHR10997//PTHR10997:SF35 - IMPORTIN-7, 8, 11 Genomic Order:  1598
Name:  ? Seita.1G159800 Secondary Identifier:  ? PAC:32696641
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G159800 0.5kb upstream 0.5kb upstream 16861 true scaffold_1: 22442253-22459113 Setaria italica
Seita.1G159800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 22442253-22442752 Setaria italica
Seita.1G159800 0.5kb downstream 0.5kb downstream 16861 true scaffold_1: 22442753-22459613 Setaria italica
Seita.1G159800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 22459114-22459613 Setaria italica
Seita.1G159800 1.0kb upstream 1.0kb upstream 17361 true scaffold_1: 22441753-22459113 Setaria italica
Seita.1G159800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 22441753-22442752 Setaria italica
Seita.1G159800 1.0kb downstream 1.0kb downstream 17361 true scaffold_1: 22442753-22460113 Setaria italica
Seita.1G159800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 22459114-22460113 Setaria italica
Seita.1G159800 2.0kb upstream 2.0kb upstream 18361 true scaffold_1: 22440753-22459113 Setaria italica
Seita.1G159800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 22440753-22442752 Setaria italica
Seita.1G159800 2.0kb downstream 2.0kb downstream 18361 true scaffold_1: 22442753-22461113 Setaria italica
Seita.1G159800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 22459114-22461113 Setaria italica
Seita.1G159800 5.0kb upstream 5.0kb upstream 21361 true scaffold_1: 22437753-22459113 Setaria italica
Seita.1G159800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 22437753-22442752 Setaria italica
Seita.1G159800 5.0kb downstream 5.0kb downstream 21361 true scaffold_1: 22442753-22464113 Setaria italica
Seita.1G159800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 22459114-22464113 Setaria italica
Seita.1G159800 10.0kb upstream 10.0kb upstream 26361 true scaffold_1: 22432753-22459113 Setaria italica
Seita.1G159800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 22432753-22442752 Setaria italica
Seita.1G159800 10.0kb downstream 10.0kb downstream 26361 true scaffold_1: 22442753-22469113 Setaria italica
Seita.1G159800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 22459114-22469113 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185676 5267 Panicoideae View MSA
124587312 5269 Grass View MSA
122042810 5273 Angiosperm View MSA
121344589 5274 Embryophyte View MSA
123424983 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.176        
cufflinks 11.231       High
cufflinks 4.446        
cufflinks 2.625       Low
cufflinks 2.541       Low
cufflinks 10.291        
cufflinks 7.379        
cufflinks 4.785        
cufflinks 5.846        
cufflinks 6.449        
cufflinks 13.083       High
cufflinks 8.35        
cufflinks 9.085        
cufflinks 6.208        
cufflinks 10.455        
cufflinks 6.876        
cufflinks 7.738        
cufflinks 7.933        
cufflinks 3.014       Low
cufflinks 10.249        

0 Strain