Gene : Seita.1G166300 S. italica v2.2
Defline:  (1 of 3) KOG3436 - 60S ribosomal protein L35 Genomic Order:  1663
Name:  ? Seita.1G166300 Secondary Identifier:  ? PAC:32697961
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G166300 0.5kb upstream 0.5kb upstream 3575 true scaffold_1: 23894617-23898191 Setaria italica
Seita.1G166300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 23894617-23895116 Setaria italica
Seita.1G166300 0.5kb downstream 0.5kb downstream 3575 true scaffold_1: 23895117-23898691 Setaria italica
Seita.1G166300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 23898192-23898691 Setaria italica
Seita.1G166300 1.0kb upstream 1.0kb upstream 4075 true scaffold_1: 23894117-23898191 Setaria italica
Seita.1G166300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 23894117-23895116 Setaria italica
Seita.1G166300 1.0kb downstream 1.0kb downstream 4075 true scaffold_1: 23895117-23899191 Setaria italica
Seita.1G166300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 23898192-23899191 Setaria italica
Seita.1G166300 2.0kb upstream 2.0kb upstream 5075 true scaffold_1: 23893117-23898191 Setaria italica
Seita.1G166300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 23893117-23895116 Setaria italica
Seita.1G166300 2.0kb downstream 2.0kb downstream 5075 true scaffold_1: 23895117-23900191 Setaria italica
Seita.1G166300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 23898192-23900191 Setaria italica
Seita.1G166300 5.0kb upstream 5.0kb upstream 8075 true scaffold_1: 23890117-23898191 Setaria italica
Seita.1G166300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 23890117-23895116 Setaria italica
Seita.1G166300 5.0kb downstream 5.0kb downstream 8075 true scaffold_1: 23895117-23903191 Setaria italica
Seita.1G166300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 23898192-23903191 Setaria italica
Seita.1G166300 10.0kb upstream 10.0kb upstream 13075 true scaffold_1: 23885117-23898191 Setaria italica
Seita.1G166300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 23885117-23895116 Setaria italica
Seita.1G166300 10.0kb downstream 10.0kb downstream 13075 true scaffold_1: 23895117-23908191 Setaria italica
Seita.1G166300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 23898192-23908191 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199568 5267 Panicoideae View MSA
124586801 5269 Grass View MSA
122050445 5273 Angiosperm View MSA
121345704 5274 Embryophyte View MSA
123426654 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.788     High  
cufflinks 43.597     High  
cufflinks 12.255     High Low
cufflinks 12.911     High Low
cufflinks 19.587     High  
cufflinks 44.794     High  
cufflinks 32.583     High  
cufflinks 68.407     High High
cufflinks 60.326     High High
cufflinks 91.274     High High
cufflinks 37.858     High  
cufflinks 35.69     High  
cufflinks 35.016     High  
cufflinks 24.725     High  
cufflinks 43.618     High  
cufflinks 15.011     High Low
cufflinks 54.122     High  
cufflinks 14.46     High Low
cufflinks 16.72     High Low
cufflinks 54.582     High  

0 Strain