Gene : Seita.1G172400 S. italica v2.2
Defline:  (1 of 1) PF12452 - Protein of unknown function (DUF3685) (DUF3685) Genomic Order:  1724
Name:  ? Seita.1G172400 Secondary Identifier:  ? PAC:32696377
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G172400 0.5kb upstream 0.5kb upstream 5001 true scaffold_1: 24722407-24727407 Setaria italica
Seita.1G172400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 24722407-24722906 Setaria italica
Seita.1G172400 0.5kb downstream 0.5kb downstream 5001 true scaffold_1: 24722907-24727907 Setaria italica
Seita.1G172400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 24727408-24727907 Setaria italica
Seita.1G172400 1.0kb upstream 1.0kb upstream 5501 true scaffold_1: 24721907-24727407 Setaria italica
Seita.1G172400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 24721907-24722906 Setaria italica
Seita.1G172400 1.0kb downstream 1.0kb downstream 5501 true scaffold_1: 24722907-24728407 Setaria italica
Seita.1G172400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 24727408-24728407 Setaria italica
Seita.1G172400 2.0kb upstream 2.0kb upstream 6501 true scaffold_1: 24720907-24727407 Setaria italica
Seita.1G172400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 24720907-24722906 Setaria italica
Seita.1G172400 2.0kb downstream 2.0kb downstream 6501 true scaffold_1: 24722907-24729407 Setaria italica
Seita.1G172400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 24727408-24729407 Setaria italica
Seita.1G172400 5.0kb upstream 5.0kb upstream 9501 true scaffold_1: 24717907-24727407 Setaria italica
Seita.1G172400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 24717907-24722906 Setaria italica
Seita.1G172400 5.0kb downstream 5.0kb downstream 9501 true scaffold_1: 24722907-24732407 Setaria italica
Seita.1G172400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 24727408-24732407 Setaria italica
Seita.1G172400 10.0kb upstream 10.0kb upstream 14501 true scaffold_1: 24712907-24727407 Setaria italica
Seita.1G172400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 24712907-24722906 Setaria italica
Seita.1G172400 10.0kb downstream 10.0kb downstream 14501 true scaffold_1: 24722907-24737407 Setaria italica
Seita.1G172400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 24727408-24737407 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179952 5267 Panicoideae View MSA
124578976 5269 Grass View MSA
122046788 5273 Angiosperm View MSA
121346077 5274 Embryophyte View MSA
123380322 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.553        
cufflinks 9.648        
cufflinks 11.575     High  
cufflinks 13.685     High  
cufflinks 37.775     High High
cufflinks 9.961        
cufflinks 40.703     High High
cufflinks 22.553     High  
cufflinks 38.352     High High
cufflinks 2.156       Low
cufflinks 4.663        
cufflinks 3.317       Low
cufflinks 3.132       Low
cufflinks 7.301        
cufflinks 3.617        
cufflinks 28.317     High High
cufflinks 4.029        
cufflinks 4.081        
cufflinks 16.768     High  
cufflinks 4.124        

0 Strain