Gene : Seita.1G177000 S. italica v2.2
Defline:  (1 of 2) PTHR19919 - WD REPEAT CONTAINING PROTEIN Genomic Order:  1770
Name:  ? Seita.1G177000 Secondary Identifier:  ? PAC:32694578
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G177000 0.5kb upstream 0.5kb upstream 1740 true scaffold_1: 25480293-25482032 Setaria italica
Seita.1G177000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 25481533-25482032 Setaria italica
Seita.1G177000 0.5kb downstream 0.5kb downstream 1740 true scaffold_1: 25479793-25481532 Setaria italica
Seita.1G177000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 25479793-25480292 Setaria italica
Seita.1G177000 1.0kb upstream 1.0kb upstream 2240 true scaffold_1: 25480293-25482532 Setaria italica
Seita.1G177000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 25481533-25482532 Setaria italica
Seita.1G177000 1.0kb downstream 1.0kb downstream 2240 true scaffold_1: 25479293-25481532 Setaria italica
Seita.1G177000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 25479293-25480292 Setaria italica
Seita.1G177000 2.0kb upstream 2.0kb upstream 3240 true scaffold_1: 25480293-25483532 Setaria italica
Seita.1G177000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 25481533-25483532 Setaria italica
Seita.1G177000 2.0kb downstream 2.0kb downstream 3240 true scaffold_1: 25478293-25481532 Setaria italica
Seita.1G177000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 25478293-25480292 Setaria italica
Seita.1G177000 5.0kb upstream 5.0kb upstream 6240 true scaffold_1: 25480293-25486532 Setaria italica
Seita.1G177000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 25481533-25486532 Setaria italica
Seita.1G177000 5.0kb downstream 5.0kb downstream 6240 true scaffold_1: 25475293-25481532 Setaria italica
Seita.1G177000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 25475293-25480292 Setaria italica
Seita.1G177000 10.0kb upstream 10.0kb upstream 11240 true scaffold_1: 25480293-25491532 Setaria italica
Seita.1G177000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 25481533-25491532 Setaria italica
Seita.1G177000 10.0kb downstream 10.0kb downstream 11240 true scaffold_1: 25470293-25481532 Setaria italica
Seita.1G177000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 25470293-25480292 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184433 5267 Panicoideae View MSA
124568823 5269 Grass View MSA
122050418 5273 Angiosperm View MSA
121348109 5274 Embryophyte View MSA
123423806 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.736     High High
cufflinks 25.504     High High
cufflinks 9.471       Low
cufflinks 8.362       Low
cufflinks 8.606       Low
cufflinks 25.861     High High
cufflinks 16.592     High  
cufflinks 14.971     High  
cufflinks 11.705        
cufflinks 16.707     High  
cufflinks 17.808     High  
cufflinks 7.986       Low
cufflinks 11.712        
cufflinks 12.742        
cufflinks 13.005        
cufflinks 18.376     High  
cufflinks 14.274     High  
cufflinks 18.962     High  
cufflinks 9.646       Low
cufflinks 13.35        

0 Strain