Gene : Seita.1G175200 S. italica v2.2
Defline:  (1 of 9) KOG2922 - Uncharacterized conserved protein Genomic Order:  1752
Name:  ? Seita.1G175200 Secondary Identifier:  ? PAC:32696234
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G175200 0.5kb upstream 0.5kb upstream 5742 true scaffold_1: 25222845-25228586 Setaria italica
Seita.1G175200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 25222845-25223344 Setaria italica
Seita.1G175200 0.5kb downstream 0.5kb downstream 5742 true scaffold_1: 25223345-25229086 Setaria italica
Seita.1G175200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 25228587-25229086 Setaria italica
Seita.1G175200 1.0kb upstream 1.0kb upstream 6242 true scaffold_1: 25222345-25228586 Setaria italica
Seita.1G175200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 25222345-25223344 Setaria italica
Seita.1G175200 1.0kb downstream 1.0kb downstream 6242 true scaffold_1: 25223345-25229586 Setaria italica
Seita.1G175200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 25228587-25229586 Setaria italica
Seita.1G175200 2.0kb upstream 2.0kb upstream 7242 true scaffold_1: 25221345-25228586 Setaria italica
Seita.1G175200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 25221345-25223344 Setaria italica
Seita.1G175200 2.0kb downstream 2.0kb downstream 7242 true scaffold_1: 25223345-25230586 Setaria italica
Seita.1G175200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 25228587-25230586 Setaria italica
Seita.1G175200 5.0kb upstream 5.0kb upstream 10242 true scaffold_1: 25218345-25228586 Setaria italica
Seita.1G175200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 25218345-25223344 Setaria italica
Seita.1G175200 5.0kb downstream 5.0kb downstream 10242 true scaffold_1: 25223345-25233586 Setaria italica
Seita.1G175200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 25228587-25233586 Setaria italica
Seita.1G175200 10.0kb upstream 10.0kb upstream 15242 true scaffold_1: 25213345-25228586 Setaria italica
Seita.1G175200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 25213345-25223344 Setaria italica
Seita.1G175200 10.0kb downstream 10.0kb downstream 15242 true scaffold_1: 25223345-25238586 Setaria italica
Seita.1G175200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 25228587-25238586 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179724 5267 Panicoideae View MSA
124572529 5269 Grass View MSA
122044146 5273 Angiosperm View MSA
121344152 5274 Embryophyte View MSA
123428799 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.81        
cufflinks 9.974       High
cufflinks 2.768       Low
cufflinks 2.534       Low
cufflinks 3.04       Low
cufflinks 12.417       High
cufflinks 6.135        
cufflinks 5.245        
cufflinks 4.953        
cufflinks 4.184        
cufflinks 5.423        
cufflinks 6.696        
cufflinks 10.279       High
cufflinks 3.144       Low
cufflinks 9.796       High
cufflinks 3.716        
cufflinks 7.248        
cufflinks 3.127       Low
cufflinks 2.973       Low
cufflinks 8.885       High

0 Strain