Gene : Seita.1G177700 S. italica v2.2
Defline:  (1 of 1) PTHR11638//PTHR11638:SF107 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  1777
Name:  ? Seita.1G177700 Secondary Identifier:  ? PAC:32698171
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G177700 0.5kb upstream 0.5kb upstream 5775 true scaffold_1: 25558974-25564748 Setaria italica
Seita.1G177700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 25558974-25559473 Setaria italica
Seita.1G177700 0.5kb downstream 0.5kb downstream 5775 true scaffold_1: 25559474-25565248 Setaria italica
Seita.1G177700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 25564749-25565248 Setaria italica
Seita.1G177700 1.0kb upstream 1.0kb upstream 6275 true scaffold_1: 25558474-25564748 Setaria italica
Seita.1G177700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 25558474-25559473 Setaria italica
Seita.1G177700 1.0kb downstream 1.0kb downstream 6275 true scaffold_1: 25559474-25565748 Setaria italica
Seita.1G177700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 25564749-25565748 Setaria italica
Seita.1G177700 2.0kb upstream 2.0kb upstream 7275 true scaffold_1: 25557474-25564748 Setaria italica
Seita.1G177700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 25557474-25559473 Setaria italica
Seita.1G177700 2.0kb downstream 2.0kb downstream 7275 true scaffold_1: 25559474-25566748 Setaria italica
Seita.1G177700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 25564749-25566748 Setaria italica
Seita.1G177700 5.0kb upstream 5.0kb upstream 10275 true scaffold_1: 25554474-25564748 Setaria italica
Seita.1G177700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 25554474-25559473 Setaria italica
Seita.1G177700 5.0kb downstream 5.0kb downstream 10275 true scaffold_1: 25559474-25569748 Setaria italica
Seita.1G177700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 25564749-25569748 Setaria italica
Seita.1G177700 10.0kb upstream 10.0kb upstream 15275 true scaffold_1: 25549474-25564748 Setaria italica
Seita.1G177700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 25549474-25559473 Setaria italica
Seita.1G177700 10.0kb downstream 10.0kb downstream 15275 true scaffold_1: 25559474-25574748 Setaria italica
Seita.1G177700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 25564749-25574748 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041323 5273 Angiosperm View MSA
122185064 5267 Panicoideae View MSA
124572283 5269 Grass View MSA
121345985 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 53.647     High  
cufflinks 9.062       Low
cufflinks 99.65     High  
cufflinks 98.355     High  
cufflinks 52.791     High  
cufflinks 8.49       Low
cufflinks 68.516     High  
cufflinks 17.518     High  
cufflinks 46.177     High  
cufflinks 27.075     High  
cufflinks 42.234     High  
cufflinks 58.617     High  
cufflinks 29.819     High  
cufflinks 359.861     High High
cufflinks 36.36     High  
cufflinks 23.606     High  
cufflinks 15.635     High Low
cufflinks 71.194     High  
cufflinks 188.663     High High
cufflinks 29.384     High  

0 Strain