Gene : Seita.1G180800 S. italica v2.2
Defline:  (1 of 1) PTHR10072//PTHR10072:SF43 - IRON-SULFUR CLUSTER ASSEMBLY PROTEIN Genomic Order:  1808
Name:  ? Seita.1G180800 Secondary Identifier:  ? PAC:32695952
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G180800 0.5kb upstream 0.5kb upstream 5538 true scaffold_1: 26058420-26063957 Setaria italica
Seita.1G180800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 26063458-26063957 Setaria italica
Seita.1G180800 0.5kb downstream 0.5kb downstream 5538 true scaffold_1: 26057920-26063457 Setaria italica
Seita.1G180800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 26057920-26058419 Setaria italica
Seita.1G180800 1.0kb upstream 1.0kb upstream 6038 true scaffold_1: 26058420-26064457 Setaria italica
Seita.1G180800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 26063458-26064457 Setaria italica
Seita.1G180800 1.0kb downstream 1.0kb downstream 6038 true scaffold_1: 26057420-26063457 Setaria italica
Seita.1G180800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 26057420-26058419 Setaria italica
Seita.1G180800 2.0kb upstream 2.0kb upstream 7038 true scaffold_1: 26058420-26065457 Setaria italica
Seita.1G180800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 26063458-26065457 Setaria italica
Seita.1G180800 2.0kb downstream 2.0kb downstream 7038 true scaffold_1: 26056420-26063457 Setaria italica
Seita.1G180800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 26056420-26058419 Setaria italica
Seita.1G180800 5.0kb upstream 5.0kb upstream 10038 true scaffold_1: 26058420-26068457 Setaria italica
Seita.1G180800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 26063458-26068457 Setaria italica
Seita.1G180800 5.0kb downstream 5.0kb downstream 10038 true scaffold_1: 26053420-26063457 Setaria italica
Seita.1G180800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 26053420-26058419 Setaria italica
Seita.1G180800 10.0kb upstream 10.0kb upstream 15038 true scaffold_1: 26058420-26073457 Setaria italica
Seita.1G180800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 26063458-26073457 Setaria italica
Seita.1G180800 10.0kb downstream 10.0kb downstream 15038 true scaffold_1: 26048420-26063457 Setaria italica
Seita.1G180800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 26048420-26058419 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193521 5267 Panicoideae View MSA
124568357 5269 Grass View MSA
122045201 5273 Angiosperm View MSA
121346515 5274 Embryophyte View MSA
123424374 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.989        
cufflinks 8.709        
cufflinks 14.536     High  
cufflinks 11.868     High  
cufflinks 15.485     High  
cufflinks 8.61        
cufflinks 16.628     High  
cufflinks 17.736     High High
cufflinks 16.866     High High
cufflinks 5.596       Low
cufflinks 5.977        
cufflinks 6.73        
cufflinks 4.503       Low
cufflinks 15.949     High  
cufflinks 5.027       Low
cufflinks 22.944     High High
cufflinks 5.736       Low
cufflinks 13.145     High  
cufflinks 14.585     High  
cufflinks 4.511       Low

0 Strain