Gene : Seita.1G195200 S. italica v2.2
Defline:  (1 of 1) PTHR12217 - LIGATIN Genomic Order:  1952
Name:  ? Seita.1G195200 Secondary Identifier:  ? PAC:32697523
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G195200 0.5kb upstream 0.5kb upstream 5852 true scaffold_1: 27670667-27676518 Setaria italica
Seita.1G195200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27670667-27671166 Setaria italica
Seita.1G195200 0.5kb downstream 0.5kb downstream 5852 true scaffold_1: 27671167-27677018 Setaria italica
Seita.1G195200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27676519-27677018 Setaria italica
Seita.1G195200 1.0kb upstream 1.0kb upstream 6352 true scaffold_1: 27670167-27676518 Setaria italica
Seita.1G195200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27670167-27671166 Setaria italica
Seita.1G195200 1.0kb downstream 1.0kb downstream 6352 true scaffold_1: 27671167-27677518 Setaria italica
Seita.1G195200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27676519-27677518 Setaria italica
Seita.1G195200 2.0kb upstream 2.0kb upstream 7352 true scaffold_1: 27669167-27676518 Setaria italica
Seita.1G195200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27669167-27671166 Setaria italica
Seita.1G195200 2.0kb downstream 2.0kb downstream 7352 true scaffold_1: 27671167-27678518 Setaria italica
Seita.1G195200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27676519-27678518 Setaria italica
Seita.1G195200 5.0kb upstream 5.0kb upstream 10352 true scaffold_1: 27666167-27676518 Setaria italica
Seita.1G195200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27666167-27671166 Setaria italica
Seita.1G195200 5.0kb downstream 5.0kb downstream 10352 true scaffold_1: 27671167-27681518 Setaria italica
Seita.1G195200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27676519-27681518 Setaria italica
Seita.1G195200 10.0kb upstream 10.0kb upstream 15352 true scaffold_1: 27661167-27676518 Setaria italica
Seita.1G195200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27661167-27671166 Setaria italica
Seita.1G195200 10.0kb downstream 10.0kb downstream 15352 true scaffold_1: 27671167-27686518 Setaria italica
Seita.1G195200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27676519-27686518 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041515 5273 Angiosperm View MSA
122179229 5267 Panicoideae View MSA
124577436 5269 Grass View MSA
121347053 5274 Embryophyte View MSA
123424674 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.935        
cufflinks 4.635        
cufflinks 4.239        
cufflinks 3.8        
cufflinks 4.321        
cufflinks 4.218        
cufflinks 4.955        
cufflinks 4.255        
cufflinks 4.521        
cufflinks 4.296        
cufflinks 5.683        
cufflinks 5.202        
cufflinks 4.61        
cufflinks 3.623       Low
cufflinks 4.772        
cufflinks 9.666       High
cufflinks 4.507        
cufflinks 15.258     High High
cufflinks 5.844        
cufflinks 4.134        

0 Strain