Gene : Seita.1G197100 S. italica v2.2
Defline:  (1 of 1) PTHR13316 - ZINC FINGER, CCHC DOMAIN CONTAINING 8 Genomic Order:  1971
Name:  ? Seita.1G197100 Secondary Identifier:  ? PAC:32694512
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G197100 0.5kb upstream 0.5kb upstream 8363 true scaffold_1: 27823624-27831986 Setaria italica
Seita.1G197100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27823624-27824123 Setaria italica
Seita.1G197100 0.5kb downstream 0.5kb downstream 8363 true scaffold_1: 27824124-27832486 Setaria italica
Seita.1G197100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27831987-27832486 Setaria italica
Seita.1G197100 1.0kb upstream 1.0kb upstream 8863 true scaffold_1: 27823124-27831986 Setaria italica
Seita.1G197100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27823124-27824123 Setaria italica
Seita.1G197100 1.0kb downstream 1.0kb downstream 8863 true scaffold_1: 27824124-27832986 Setaria italica
Seita.1G197100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27831987-27832986 Setaria italica
Seita.1G197100 2.0kb upstream 2.0kb upstream 9863 true scaffold_1: 27822124-27831986 Setaria italica
Seita.1G197100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27822124-27824123 Setaria italica
Seita.1G197100 2.0kb downstream 2.0kb downstream 9863 true scaffold_1: 27824124-27833986 Setaria italica
Seita.1G197100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27831987-27833986 Setaria italica
Seita.1G197100 5.0kb upstream 5.0kb upstream 12863 true scaffold_1: 27819124-27831986 Setaria italica
Seita.1G197100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27819124-27824123 Setaria italica
Seita.1G197100 5.0kb downstream 5.0kb downstream 12863 true scaffold_1: 27824124-27836986 Setaria italica
Seita.1G197100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27831987-27836986 Setaria italica
Seita.1G197100 10.0kb upstream 10.0kb upstream 17863 true scaffold_1: 27814124-27831986 Setaria italica
Seita.1G197100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27814124-27824123 Setaria italica
Seita.1G197100 10.0kb downstream 10.0kb downstream 17863 true scaffold_1: 27824124-27841986 Setaria italica
Seita.1G197100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27831987-27841986 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181062 5267 Panicoideae View MSA
124568294 5269 Grass View MSA
122044061 5273 Angiosperm View MSA
121350555 5274 Embryophyte View MSA
123424500 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.147       High
cufflinks 3.155       High
cufflinks 2.254        
cufflinks 2.024       Low
cufflinks 2.159       Low
cufflinks 3.287       High
cufflinks 2.371        
cufflinks 2.278        
cufflinks 2.349        
cufflinks 2.31        
cufflinks 2.697        
cufflinks 2.821        
cufflinks 2.478        
cufflinks 2.186       Low
cufflinks 3.078       High
cufflinks 2.548        
cufflinks 3.184       High
cufflinks 2.806        
cufflinks 2.223        
cufflinks 2.981        

0 Strain