Gene : Seita.1G295500 S. italica v2.2
Defline:  (1 of 1) PTHR14374 - FOIE GRAS Genomic Order:  2955
Name:  ? Seita.1G295500 Secondary Identifier:  ? PAC:32695554
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G295500 0.5kb upstream 0.5kb upstream 6912 true scaffold_1: 36296828-36303739 Setaria italica
Seita.1G295500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36296828-36297327 Setaria italica
Seita.1G295500 0.5kb downstream 0.5kb downstream 6912 true scaffold_1: 36297328-36304239 Setaria italica
Seita.1G295500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36303740-36304239 Setaria italica
Seita.1G295500 1.0kb upstream 1.0kb upstream 7412 true scaffold_1: 36296328-36303739 Setaria italica
Seita.1G295500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36296328-36297327 Setaria italica
Seita.1G295500 1.0kb downstream 1.0kb downstream 7412 true scaffold_1: 36297328-36304739 Setaria italica
Seita.1G295500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36303740-36304739 Setaria italica
Seita.1G295500 2.0kb upstream 2.0kb upstream 8412 true scaffold_1: 36295328-36303739 Setaria italica
Seita.1G295500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36295328-36297327 Setaria italica
Seita.1G295500 2.0kb downstream 2.0kb downstream 8412 true scaffold_1: 36297328-36305739 Setaria italica
Seita.1G295500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36303740-36305739 Setaria italica
Seita.1G295500 5.0kb upstream 5.0kb upstream 11412 true scaffold_1: 36292328-36303739 Setaria italica
Seita.1G295500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36292328-36297327 Setaria italica
Seita.1G295500 5.0kb downstream 5.0kb downstream 11412 true scaffold_1: 36297328-36308739 Setaria italica
Seita.1G295500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36303740-36308739 Setaria italica
Seita.1G295500 10.0kb upstream 10.0kb upstream 16412 true scaffold_1: 36287328-36303739 Setaria italica
Seita.1G295500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36287328-36297327 Setaria italica
Seita.1G295500 10.0kb downstream 10.0kb downstream 16412 true scaffold_1: 36297328-36313739 Setaria italica
Seita.1G295500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36303740-36313739 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186410 5267 Panicoideae View MSA
124578930 5269 Grass View MSA
122043312 5273 Angiosperm View MSA
121344213 5274 Embryophyte View MSA
123424379 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.449       High
cufflinks 10.844        
cufflinks 9.136        
cufflinks 7.837        
cufflinks 7.881        
cufflinks 10.078        
cufflinks 9.788        
cufflinks 7.063       Low
cufflinks 7.368       Low
cufflinks 6.618       Low
cufflinks 11.073       High
cufflinks 9.693        
cufflinks 8.448        
cufflinks 7.241       Low
cufflinks 13.377       High
cufflinks 10.321        
cufflinks 9.311        
cufflinks 9.485        
cufflinks 8.078        
cufflinks 10.792        

0 Strain