Gene : Seita.1G320300 S. italica v2.2
Defline:  (1 of 1) PTHR23074:SF95 - AAA-TYPE ATPASE DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  3203
Name:  ? Seita.1G320300 Secondary Identifier:  ? PAC:32697910
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G320300 0.5kb upstream 0.5kb upstream 11638 true scaffold_1: 38108192-38119829 Setaria italica
Seita.1G320300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38108192-38108691 Setaria italica
Seita.1G320300 0.5kb downstream 0.5kb downstream 11638 true scaffold_1: 38108692-38120329 Setaria italica
Seita.1G320300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38119830-38120329 Setaria italica
Seita.1G320300 1.0kb upstream 1.0kb upstream 12138 true scaffold_1: 38107692-38119829 Setaria italica
Seita.1G320300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38107692-38108691 Setaria italica
Seita.1G320300 1.0kb downstream 1.0kb downstream 12138 true scaffold_1: 38108692-38120829 Setaria italica
Seita.1G320300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38119830-38120829 Setaria italica
Seita.1G320300 2.0kb upstream 2.0kb upstream 13138 true scaffold_1: 38106692-38119829 Setaria italica
Seita.1G320300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38106692-38108691 Setaria italica
Seita.1G320300 2.0kb downstream 2.0kb downstream 13138 true scaffold_1: 38108692-38121829 Setaria italica
Seita.1G320300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38119830-38121829 Setaria italica
Seita.1G320300 5.0kb upstream 5.0kb upstream 16138 true scaffold_1: 38103692-38119829 Setaria italica
Seita.1G320300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38103692-38108691 Setaria italica
Seita.1G320300 5.0kb downstream 5.0kb downstream 16138 true scaffold_1: 38108692-38124829 Setaria italica
Seita.1G320300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38119830-38124829 Setaria italica
Seita.1G320300 10.0kb upstream 10.0kb upstream 21138 true scaffold_1: 38098692-38119829 Setaria italica
Seita.1G320300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38098692-38108691 Setaria italica
Seita.1G320300 10.0kb downstream 10.0kb downstream 21138 true scaffold_1: 38108692-38129829 Setaria italica
Seita.1G320300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38119830-38129829 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185159 5267 Panicoideae View MSA
124571183 5269 Grass View MSA
122044741 5273 Angiosperm View MSA
121348057 5274 Embryophyte View MSA
123380716 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.275        
cufflinks 3.701        
cufflinks 7.589        
cufflinks 7.091        
cufflinks 6.771        
cufflinks 3.778        
cufflinks 5.886        
cufflinks 6.659        
cufflinks 8.683       High
cufflinks 3.374       Low
cufflinks 5.394        
cufflinks 3.62        
cufflinks 3.225       Low
cufflinks 6.378        
cufflinks 3.234       Low
cufflinks 7.89       High
cufflinks 2.846       Low
cufflinks 11.048       High
cufflinks 4.762        
cufflinks 2.933       Low

0 Strain